Detailed information on CNT30346665


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671404Eragrostis tefSetaria viridis49.5738.4189.08174forward
CNT30540598Eragrostis tefBrassica napus48.4318.8981.76170forward
CNT30228423Eragrostis tefAnanas comosus33.921.181.51119forward
CNT30655297Eragrostis tefRosa chinensis45.8729.1180.75161forward
CNT30362276Eragrostis tefSorghum bicolor45.8777.488.2161forward
CNT30706792Eragrostis tefPrunus avium49.5713.9382.18174forward
CNT3026780Eragrostis tefPopulus trichocarpa51.8520.2981.87182forward
CNT30322506Eragrostis tefAsparagus officinalis28.2111.2984.8599forward
CNT30151225Eragrostis tefBrachypodium distachyon22.7925.2483.7580forward
CNT30577134Eragrostis tefOryza barthii79.4987.7489.25279forward

Expression of CNT30346665

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MFAEENLNRSKSPSKNLVKTIRKIQGCGTFECRPLRDAVNRPPTMTVHLKSSQDILCNRSINP

>peptide 2 (42 aa)
YLWCDKLPGEQAYSRQGTVCQERNGCPGVYNRVDIREPLQEF*

>peptide 3 (34 aa)
TSGVINFPVSKHIAGKVQYAKSGTDVQGYTIELI*

Sequence

>CNT30346665
GTACCTCTGGTGTGATAAACTTCCCGGTGAGCAAGCATATAGCAGGCAAGGTACAGTATGCCAAGAGCGGAACGGATGTCCAGGGGTATACAATAGAGTT
GATATAAGAGAACCTCTCCAAGAATTTTAGACCGCCACCATAACCATACCAAAGTGGGCAATGTTTGCTGAAGAAAATCTCAACAGATCCAAGAGCCCAT
CGAAGAACTTGGTGAAGACGATCAGAAAGATTCAGGGGTGCGGAACCTTTGAATGCAGGCCGCTTCGGGATGCAGTAAATAGACCGCCAACCATGACAGT
GCATCTTAAATCCAGTCAAGATATCCTCTGTAATAGATCCATAAATCCATC