Detailed information on CNT30346251


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 3e-129

BLAST vs NONCODE:
NONORUT003941, E-value = 3e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249176Eragrostis tefAvena sativa73.2770.2586.04444forward
CNT30453160Eragrostis tefSaccharum spontaneum97.3621.6790590forward
CNT30229173Eragrostis tefAnanas comosus58.2512.1681.87353forward
CNT30362965Eragrostis tefSorghum bicolor96.8620.5888.76587forward
CNT30596291Eragrostis tefOryza meridionalis66.6798.5487.62404forward
CNT30107897Eragrostis tefOryza longistaminata98.1825.5686.05595forward
CNT30100657Eragrostis tefOryza rufipogon98.1822.1385.88595forward
CNT30576541Eragrostis tefOryza barthii98.1818.9486.22595forward
CNT30580242Eragrostis tefEchinochloa crusgalli97.3622.8289.49590forward
CNT30557998Eragrostis tefPanicum hallii80.219.6490.12486forward

Expression of CNT30346251

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VGSSHDAMCRVMEQIQVTTSCLNSLPVLC*

>peptide 2 (31 aa)
MQSNLSKLLFTGRRSFNKLYALADIVDDTVN*

Sequence

>CNT30346251
GGGTTGGCAGCAGCCATGATGCTATGTGCAGAGTCATGGAGCAGATTCAGGTAACTACAAGCTGCCTCAACTCTCTTCCAGTCCTCTGCTGAAGGGGCTT
CATTGTAATTATCATCATGTGTCTCTAGTGTAGTAAATGCCTGCCTGTAATCCAAGGCAGCCAGCAGCATCAGATAGGTGGTGTTCCACTGGGTTGTAAC
ATCCAGACAAAGGGTCTTGGTACTGGGAATCTCCAAATGCAGAGCAATCTCAGCAAACTTCTCTTCACGGGTAGGAGAAGCTTTAATAAACTTTATGCTC
TCGCGGATATTGTAGACGACACCGTGAATTGAAGCAATGACATCCTGTGCTACGGCATTAAGAATATGGGCATAGCACCTCACAACAAACAGCTGTCCCT
TGAGCATCAGATTGTTCTTGTTGGAGAGATGATCCCTTAGATTTGCACTGTAGATGTCGTGAGAGGAGCATTCATTATCCAGTGTGATAGTGAATAGTTT
GTCCTTCAGATTCCAGTCAGAAAGGCTCAAGCTAATTGCTTCACTAAGTGCGTTTTCTGAATGAGGAGAGGACACCATCATGAAGTTAAGCATTCTTCGG
TGTACT