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Detailed information on CNT30346089


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677435Eragrostis tefSetaria viridis29.8939.7285.12168reverse complement
CNT30524561Eragrostis tefSetaria italica24.3811.7695.62137forward
CNT30639598Eragrostis tefNymphaea colorata26.1624.6280.27147forward
CNT30533654Eragrostis tefEucalyptus grandis20.8223.8885.47117forward
CNT30514302Eragrostis tefJuglans regia22.9522.5989.92129forward
CNT30275526Eragrostis tefChenopodium quinoa25.2725.7281.69142forward
CNT30180424Eragrostis tefSecale cereale25.4422.189.51143forward
CNT30221624Eragrostis tefHordeum vulgare25.4421.0988.81143forward
CNT30386243Eragrostis tefTriticum turgidum27.0522.4588.82152forward
CNT30249706Eragrostis tefAvena sativa27.2223.6190.2153forward
CNT30467515Eragrostis tefSaccharum spontaneum26.8720.5294.7151forward
CNT30135597Eragrostis tefLolium perenne27.2229.5988.89153forward
CNT307034Eragrostis tefZea mays24.3817.3695.62137forward
CNT30624138Eragrostis tefDaucus carota25.4426.8381.12143forward
CNT30597257Eragrostis tefOryza meridionalis25.9829.2691.1146forward
CNT30355824Eragrostis tefLactuca sativa25.2718.2180.99142forward
CNT30371492Eragrostis tefOryza glumipatula25.9827.1990.41146forward
CNT30415958Eragrostis tefPapaver somniferum25.2720.5281.69142forward
CNT3053146Eragrostis tefAmborella trichopoda25.823.0282.76145forward
CNT30108688Eragrostis tefOryza longistaminata25.9826.0291.1146forward
CNT30104475Eragrostis tefOryza rufipogon25.9825.9891.1146forward
CNT30578401Eragrostis tefOryza barthii25.9826.1291.1146forward
CNT30581754Eragrostis tefEchinochloa crusgalli28.1120.6594.94158forward
CNT30118085Eragrostis tefOryza nivara25.9827.3491.1146forward
CNT3065513Eragrostis tefSelaginella moellendorffii9.2522.9194.2352reverse complement

Expression of CNT30346089

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIGNFSATLLLRVWLVQIVGCHHVRACFSTS

>peptide 2 (88 aa)
SKKHSPARRPIYPSSALHHSPAGVEKKKKKETLTPTLSCGGGQDDLRRELAPLPLLPQPEGRRRQEENGRAQTKGAEAQGQREQACDE*

>peptide 3 (46 aa)
MIYDVNSPLFRSFLSQKGGADRRKMEEHKPKEQRPKANENKPVMNE*

>peptide 4 (34 aa)
MLETHDWQLFSNPSVTGLVGTNCGVPPCSCLLFHL

>peptide 5 (32 aa)
LRSIAQLDDPSIHLRLSITHPPESRRRRRRKP*

Sequence

>CNT30346089
GTCTAAGAAGCATAGCCCAGCTCGACGACCCATCTATCCATCTTCGGCTCTCCATCACTCACCCGCCGGAGTCGAGAAGAAGAAGAAGAAGGAAACCCTA
ACCCCCACTCTCTCCTGTGGCGGCGGACAAGATGATCTACGACGTGAACTCGCCCCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCGACAGGAGG
AAAATGGAAGAGCACAAACCAAAGGAGCAGAGGCCCAAGGCCAACGAGAACAAGCCTGTGATGAATGAGTGAGCATCTTCGGAAGCACCCAATGTCACAA
AATGTAATGTCTGTTATTTAGCTGGAAACTAGAGCATCTTAAGAACGTTGTCATTCCTAGATTCTTCTCCAGGTAGTCTTAAACTCTTAATCCCTCTTGT
CGAACATGGTGACAATGCAATGGATATGAAACTTCAACTACCTATGAGTATGATCAATGTTAGAGACCCATGATTGGCAACTTTTCAGCAACCCTTCTGT
TACGGGTTTGGTTGGTACAAATTGTGGGGTGCCACCATGTTCGTGCCTGCTTTTCCACCTCC