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Detailed information on CNT30346087


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Eragrostis tefSetaria italica59.2818.699.84613forward
CNT30641383Eragrostis tefNymphaea colorata79.526.3193.31822forward
CNT30550219Eragrostis tefIpomoea triloba78.7218.7597.67814forward
CNT30702366Eragrostis tefQuercus lobata38.9740.4698.51403reverse complement
CNT30378673Eragrostis tefArabidopsis thaliana69.6357.7496.67720reverse complement
CNT30619000Eragrostis tefSesamum indicum57.1619.3594.92591forward
CNT30283003Eragrostis tefChenopodium quinoa69.7375.597.5721reverse complement
CNT3020470Eragrostis tefCitrullus lanatus32.6962.7198.52338reverse complement
CNT30632346Eragrostis tefVigna unguiculata76.0228.197.33786forward
CNT30506406Eragrostis tefNicotiana attenuata78.8231.8597.55815reverse complement
CNT30185187Eragrostis tefSecale cereale82.0123.9899.76848forward
CNT30299053Eragrostis tefTriticum aestivum82.0123.6799.41848forward
CNT30219690Eragrostis tefHordeum vulgare62.6794.698.15648reverse complement
CNT30396495Eragrostis tefTriticum turgidum82.0152.6499.76848forward
CNT30569655Eragrostis tefActinidia chinensis78.3422.7596.67810forward
CNT30543266Eragrostis tefBrassica napus66.0525.1796.63683forward
CNT30554477Eragrostis tefOryza glaberrima33.2747.5899.13344reverse complement
CNT30147396Eragrostis tefMedicago truncatula75.9226.3997.45785forward
CNT30438197Eragrostis tefAegilops tauschii41.140.59100425forward
CNT30245388Eragrostis tefAvena sativa31.5394.2299.39326reverse complement
CNT30670388Eragrostis tefTriticum dicoccoides76.8928.3599.5795forward
CNT30140161Eragrostis tefLolium perenne81.9124.88100847forward
CNT3017954Eragrostis tefZea mays82.6922.5798.83855forward
CNT30605068Eragrostis tefGossypium raimondii79.6953.9396.6824reverse complement
CNT30216578Eragrostis tefKalanchoe fedtschenkoi75.5323.4597.44781forward
CNT3067980Eragrostis tefLeersia perrieri15.5753.4997.52161reverse complement
CNT30655407Eragrostis tefRosa chinensis77.9524.1197.64806forward
CNT30628241Eragrostis tefDaucus carota68.8626.3799.16712reverse complement
CNT30688989Eragrostis tefTriticum urartu75.7339.8199.87783forward
CNT30721631Eragrostis tefTriticum spelta82.0124.4299.53848forward
CNT30359771Eragrostis tefLactuca sativa81.6280.7797.16844forward
CNT30484250Eragrostis tefChara braunii18.2826.0394.71189reverse complement
CNT30429739Eragrostis tefPapaver somniferum68.3821.9893.49707forward
CNT30571858Eragrostis tefVitis vinifera81.5324.3297.51843reverse complement
CNT30644906Eragrostis tefCannabis sativa20.0264.6990.82207reverse complement
CNT3056076Eragrostis tefAmborella trichopoda66.1529.7193.71684forward
CNT3038324Eragrostis tefCucumis melo69.5438.1297.5719reverse complement
CNT3099709Eragrostis tefOryza rufipogon35.8817.04100371forward
CNT30499372Eragrostis tefDigitaria exilis82.0124.95100848forward
CNT30603680Eragrostis tefOryza punctata82.0121.4899.88848forward
CNT30557400Eragrostis tefPanicum hallii63.3547.7498.17655forward

Expression of CNT30346087

Peptides detected in this lncRNA

>peptide 1 (79 aa)
GRQVRRVANAGHQLDMRFSLVFCRWLGNYYLSKATSRVSIGKPLIMLRFSHLFGYQPARLGFPSFLISVLAFFIFRRGL*

Sequence

>CNT30346087
GGGGAGGCAGGTGAGAAGAGTTGCCAATGCCGGCCATCAATTAGATATGAGATTTTCTCTTGTATTCTGTAGATGGTTAGGTAACTATTATCTGTCAAAA
GCTACAAGCAGAGTATCAATTGGGAAGCCTCTGATCATGCTACGCTTCTCTCATTTGTTTGGATACCAGCCAGCTAGATTAGGGTTTCCTTCCTTTCTCA
TTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCG
AGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGG
GAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACG
ATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAAC
TGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAA
TTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAG
GTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGCGGGACACTG
CGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCC