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Detailed information on CNT30346086


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 6e-11

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696470Eragrostis tefOryza sativa32.4535.1997.56246reverse complement
CNT30672164Eragrostis tefSetaria viridis96.4487.9799.18731forward
CNT30524651Eragrostis tefSetaria italica61.2121.85100464forward
CNT30406993Eragrostis tefBeta vulgaris15.0429.4689.47114reverse complement
CNT30490123Eragrostis tefOlea europaea35.3615.3995.52268forward
CNT30162096Eragrostis tefPistacia vera16.4942.09100125reverse complement
CNT3089926Eragrostis tefSolanum tuberosum46.3115.8797.44351reverse complement
CNT30555751Eragrostis tefOryza glaberrima54.3557.7898.54412reverse complement
CNT30441792Eragrostis tefAegilops tauschii53.6965.3396.56407forward
CNT30600960Eragrostis tefFraxinus excelsior23.2219.4984.66176forward
CNT30207637Eragrostis tefHelianthus annuus28.6311.0994.47217forward
CNT30715685Eragrostis tefMalus domestica golden59.8937.384.14454reverse complement
CNT30362056Eragrostis tefSorghum bicolor18.4733.9897.14140reverse complement
CNT30595568Eragrostis tefOryza meridionalis50.6698.9799.22384reverse complement
CNT30106724Eragrostis tefOryza longistaminata22.8219.4698.84173forward
CNT30331625Eragrostis tefDioscorea rotundata30.8773.5897.44234forward
CNT30151167Eragrostis tefBrachypodium distachyon15.720.38100119reverse complement
CNT30103741Eragrostis tefOryza rufipogon53.9677.7696.82409reverse complement
CNT30581628Eragrostis tefEchinochloa crusgalli10.9524.2789.1683forward
CNT3039925Eragrostis tefMarchantia polymorpha43.2766.1394.82328forward

Expression of CNT30346086

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GGHGFFSKGEDSEVGEHSAQRANMPAPAPRTC*

>peptide 2 (66 aa)
ADTDFSLKAKTLKWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVLAFFIFRRGL*

Sequence

>CNT30346086
GGCGGACACGGATTTTTCTCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCTCCGCGCACCTGCTGAC
ACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTT
AGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAA
CGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTAT
ACTAGGGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGG
CACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCG
GAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCG
ACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATT