Detailed information on CNT30346084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677870Eragrostis tefSetaria viridis14.7620.9596.2353reverse complement

Expression of CNT30346084

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ELSGLTQSFRLSQFVDTGQPHHHTKAIFTGVEHKMLRPSR*

>peptide 2 (74 aa)
MAATSLSSSPPRATARLGGVPRSSVSYTQLAFRSRHPFQKLPAPELLLLSSPARNKHARTTRPATENNQAAPAAA

>peptide 3 (92 aa)
RVVGSNPIVSAEPIRGHWTASPSHESYLHWRRAQNAPPKQMRGGWLPPASAPPRPGLLHDSEESPDPPCRTRSSRSARGIRSRSFQHPSFSC*

Sequence

>CNT30346084
CCGAGTTGTCGGGTCTAACCCAATCGTTTCGGCTGAGCCAATTCGTGGACACTGGACAGCCTCACCATCACACGAAAGCTATCTTCACTGGCGTCGAGCA
CAAAATGCTCCGCCCAAGCAGATGAGAGGAGGATGGCTGCCACCAGCCTCAGCTCCTCCCCGCCCAGGGCTACTGCACGACTCGGAGGAGTCCCCAGATC
CTCCGTGTCGTACACGCAGCTCGCGTTCCGCTCGAGGCATCCGTTCCAGAAGCTTCCAGCACCCGAGCTTCTCCTGCTGAGCTCGCCGGCGAGGAACAAG
CATGCAAGAACCACCCGCCCGGCCACGGAGAACAACCAAGCGGCGCCGGCCGCGGCACA