Detailed information on CNT30345769


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3D9|PORB_ORYSJ, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521311Eragrostis tefSetaria italica32.7116.0587.43191forward
CNT30678950Eragrostis tefTriticum urartu27.431.7589.38160forward
CNT30585175Eragrostis tefEchinochloa crusgalli16.7820.3788.7898forward
CNT30497116Eragrostis tefDigitaria exilis39.3823.3591.3230forward

Expression of CNT30345769

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MPAAFAARDALRKSRHAMMTCHLPVSASALAVARPRPDDAPVTDGDDTAAVCARMATEVLTLCK*

>peptide 2 (80 aa)
QVDGHLQLPHVLHELADAVQGRQVQVHDGVAVLVHARRLRRARRLEEVAARHDDVPLARLRQRLGGGQAETRRRARHGRR*

>peptide 3 (42 aa)
MTPPRFARGWPPKCSPSASNGICCNLFQWHRTVTDTTQRLPN*

>peptide 4 (45 aa)
PGRRASPAAARSSRTGGRCPGTPGPGARWCSCPCPCPPPSPRATP*

>peptide 5 (30 aa)
TRSTGISSCRTFFTNWRTLSRDARSRCTMV*

Sequence

>CNT30345769
ACCAGGTCGACGGGCATCTCCAGCTGCCGCACGTTCTTCACGAACTGGCGGACGCTGTCCAGGGACGCCAGGTCCAGGTGCACGATGGTGTAGCTGTCCT
TGTCCATGCCCGCCGCCTTCGCCGCGCGCGACGCCTTGAGGAAGTCGCGGCACGCCATGATGACGTGCCACTTGCCCGTCTCCGCCAGCGCCTTGGCGGT
GGCCAGGCCGAGACCCGACGACGCGCCCGTCACGGACGGCGATGACACCGCCGCGGTTTGCGCGCGGATGGCCACCGAAGTGCTCACCCTCTGCAAGTAA
CGGAATATGTTGCAACTTGTTTCAGTGGCATCGTACAGTGACTGACACTACGCAAAGGCTACCAAACTGAAATCGTTACAGGACTAGTGATAATTACTAG
ATAACCCATGCATTCCGATTTCAAATTCAAGTGACAAATCAAATGATAGCCGGAGAATGCCATTGGCTACAGAGCATAGCTATCAGGGCACTCACAAACT
GAAAGTCTGAACTGCCATTCTGACGATGGCATCAGAGGTCATTTGGCCAGGCGACATATCGACTCACAATCGTTTTATTACCTC