« Back to Eragrostis tef search


Detailed information on CNT30345725


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 9e-65

BLAST vs NONCODE:
NONMTRT002042, E-value = 1e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673759Eragrostis tefSetaria viridis49.4141.5492.12292forward
CNT30584505Eragrostis tefEchinochloa crusgalli51.160.8991.72302forward
CNT30592842Eragrostis tefEragrostis curvula101.5273.891.17600forward

Expression of CNT30345725

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSKVMVLPVRVFTKICMPPLRRRTR*

Sequence

>CNT30345725
CTAATCAATCCACAATAATTTCAATAGTAGCGCACAACCATACAGAATGAAAAACCAGACGGATGAAGCTGAACAGAGCACAAATATAAGTTCAAACGTC
ACTTATTAAGCCGCTGCACCTCTTAAATTGTTTCCAAGTACGACATAAAAGGACTAACAGTCAATAGAACCAAACAGCACTACGACACAACCCACAACCT
GAACTTCAAAGGAGAACACCCTTCAGGAGACCAGACATCATAGGCACCGGGCGACCCAGGTACAGCAGCAGCTTCAACAAGCAGTCTACTGACCACCACG
GAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGC
TGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGGG
TCTTCACAAAGATCTGCATGCCACCCCTGAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCC