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Detailed information on CNT30345702


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 3e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Eragrostis tefSetaria viridis22.5228.3991.76182forward
CNT30532226Eragrostis tefEucalyptus grandis39.9844.6784.83323forward
CNT30316236Eragrostis tefCorylus avellana21.4137.6986.13173forward
CNT30547527Eragrostis tefIpomoea triloba36.2667.6781.57293forward
CNT30512951Eragrostis tefJuglans regia66.7169.180.89539forward
CNT30372986Eragrostis tefArabidopsis thaliana53.7142.4780.88434forward
CNT30276060Eragrostis tefChenopodium quinoa36.0145.980.76291forward
CNT3019597Eragrostis tefCitrullus lanatus5054.0182.92404forward
CNT30728649Eragrostis tefCorchorus capsularis41.5830.8580.06336forward
CNT30379936Eragrostis tefManihot esculenta11.2627.2587.9191forward
CNT30405825Eragrostis tefBeta vulgaris18.3264.6386.49148forward
CNT30488117Eragrostis tefOlea europaea19.5532.3884.18158forward
CNT30711584Eragrostis tefGlycine max30.3234.884.9245forward
CNT3045373Eragrostis tefPrunus dulcis66.7168.7582539forward
CNT30191304Eragrostis tefSecale cereale67.8242.1286.5548forward
CNT30300473Eragrostis tefTriticum aestivum67.8256.6186.68548forward
CNT30224354Eragrostis tefHordeum vulgare40.2262.6289.23325forward
CNT30395070Eragrostis tefTriticum turgidum3840.1387.95307forward
CNT30561656Eragrostis tefActinidia chinensis67.238.7980.48543forward
CNT3085191Eragrostis tefVigna radiata32.9237.184.59266forward
CNT30510505Eragrostis tefSolanum lycopersicum63.7447.4282.72515forward
CNT30552635Eragrostis tefOryza glaberrima25.6219.9488.41207forward
CNT30143941Eragrostis tefMedicago truncatula32.5558.7182.13263forward
CNT30441158Eragrostis tefAegilops tauschii66.7171.0187.01539forward
CNT30309793Eragrostis tefCamelina sativa53.4755.5381.02432forward
CNT3059659Eragrostis tefArabidopsis lyrata23.1443.0983.42187forward
CNT30612508Eragrostis tefArabis alpina52.7216.7880.28426forward
CNT30135610Eragrostis tefLolium perenne26.3625.1882.63213forward
CNT3015270Eragrostis tefZea mays31.5656.2988.63255forward
CNT30605685Eragrostis tefGossypium raimondii32.6734.5581.06264forward
CNT30203835Eragrostis tefHelianthus annuus33.5456.4679.34271forward
CNT30683923Eragrostis tefTriticum urartu3833.5586.97307forward
CNT30722731Eragrostis tefTriticum spelta27.4843.4484.23222forward
CNT30361520Eragrostis tefSorghum bicolor37.3844.1589.74302forward
CNT30596122Eragrostis tefOryza meridionalis33.5439.1688.56271forward
CNT30359537Eragrostis tefLactuca sativa36.5144.7680.34295forward
CNT30369654Eragrostis tefOryza glumipatula25.6223.5287.92207forward
CNT30153558Eragrostis tefPrunus persica25.3760.6582.44205forward
CNT30107537Eragrostis tefOryza longistaminata31.4427.6485.83254forward
CNT30332479Eragrostis tefDioscorea rotundata15.8445.2389.84128forward
CNT30149525Eragrostis tefBrachypodium distachyon14.3638.4187.07116forward
CNT30100260Eragrostis tefOryza rufipogon52.3558.9189.36423forward
CNT30575986Eragrostis tefOryza barthii40.7227.8689.97329forward
CNT30497456Eragrostis tefDigitaria exilis18.4451.0387.92149forward
CNT30116094Eragrostis tefOryza nivara25.6223.5288.41207forward
CNT30604019Eragrostis tefOryza punctata25.1260.0688.18203forward
CNT3050899Eragrostis tefCucumis sativus19.9363.8986.96161forward

Expression of CNT30345702

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MQAQHNLQGISGKTTHLSDHSKSSSTMTDTKIWFQQLHMTLQINLTPQETSKGPQFSHIRPKKA*

>peptide 2 (91 aa)
MASLLVQNTINATESVLRGLDLHKVHRLQQPWLSSELRSIDDPPSSRDNLTTTPVNRISMENNITHLKADATHVLLSQCTFLRRPLKTSHNG

Sequence

>CNT30345702
GAACTGATAAGCTTCTCATAAAAAATGCAAGCACAACATAATCTACAAGGGATATCAGGCAAAACGACCCACTTATCAGATCATTCCAAATCCAGCTCCA
CCATGACAGATACCAAAATATGGTTCCAGCAGTTGCATATGACGTTACAAATAAACTTGACACCTCAAGAAACATCAAAAGGACCACAATTTTCTCACAT
TAGACCAAAAAAAGCATAAAAGGATTACTAGCCTAACAGCAGAACACGCACAAAAGAAAAATTACAGCTTGTCCTCGAACTCAGACAGAGGGGTCATCTG
CTCCTTCAGCCCCTTCCTCTTGCGGATATCCAAGACCAGCTGTGCCGCCTGCGAGCCTGCCTCCAAAGGATCAGAAGACATCATGTCCCAATGGTCAAAC
ACACACTGAGGGAACGCCTGGCCAGAGGTTGCAGCCCTGAGTGTGCTTGAGAACCCAAAGGACTCAATAACAGGGAGGTAGGCCTTGATGTTGTACAGTG
GGGTACCAGGCCTCTGCATCTCCTCAAACACATGGCCTCTCTTCTGGTTCAGAACACCATAAATGCCACCGAGAGCGTTCTCAGGGGCCTGGATCTCCAC
AAGGTACACAGGCTCCAGCAGCCTTGGCTTAGCAGTGAGTTGAGAAGCATAGATGACCCTCCTAGCAGTAGGGATAACCTGACCACCACCCCTGTGAATC
GCATCAGCATGGAGAACAACATCACACACCTCAAAGCAGATGCCACGCATGTTCTCCTCAGCCAGTGCACCTTCCTTCGACGCCCATTGAAAACCAGCCA
CAACGGAA