Detailed information on CNT30345523


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297854Eragrostis tefTriticum aestivum47.8449.3792.11431forward
CNT30224983Eragrostis tefHordeum vulgare26.6439.3494.58240forward
CNT30441097Eragrostis tefAegilops tauschii31.1947.2394.31281forward
CNT30664567Eragrostis tefTriticum dicoccoides56.3862.1890.16508forward
CNT30129910Eragrostis tefCorymbia citriodora35.0750.1692.09316forward
CNT30685532Eragrostis tefTriticum urartu34.9633.5894.6315forward
CNT30721767Eragrostis tefTriticum spelta26.6431.9695.42240forward
CNT30362899Eragrostis tefSorghum bicolor63.9363.7990.8576forward
CNT30596886Eragrostis tefOryza meridionalis30.326.8295.24273forward

Expression of CNT30345523

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

>peptide 2 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (39 aa)
MSTTWQAQMARMLCAWIRLGSRFLAKVSGSAERPAVSHP*

>peptide 4 (35 aa)
MVMRASPKAPTLMGVPAIAGEEIAAMVEAAIADRA*

Sequence

>CNT30345523
TTATTTAATTTATTGAGTCATTCATCAGGCCCATCCAGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTA
CTCGTACACCCACAGGTACAATAGTACATACGAATACGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGA
AGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGCACAAA
GAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGCGGGTCG
AAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCC
AGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTC
GCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCC
ACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGGCCTCGCCGAAGGCGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCAG
CCATGGTGGAGGCAGCCATTGCTGATCGAGCGTGAGCTGATGAGAGAGTGTGCTAGCTAGCTGTGCGATGAGTGTGCCGGAGCGGGCGACGCGGGCTAAA
T