CANTATAdb - search

Detailed information on CNT30345516

BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 4e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30641294	Eragrostis tef	Nymphaea colorata	66.67	48.96	88.1	496	forward
CNT30186790	Eragrostis tef	Secale cereale	61.69	48.83	93.9	459	forward
CNT30589827	Eragrostis tef	Musa acuminata	55.51	54.13	88.38	413	forward
CNT30552192	Eragrostis tef	Oryza glaberrima	61.56	55.18	94.54	458	forward
CNT30596901	Eragrostis tef	Oryza meridionalis	65.86	50.26	92.24	490	forward

Expression of CNT30345516

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 2 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

Sequence

>CNT30345516
TGATAAATGGGTACCATGTGCAGAAAGATGTCATCTCTGTAAATAAAAATTTACAGCTCCATGCTTATTTAATTTATTGAGTCATTCATCAGGCCCATCC
AGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTACTCGTACACCCACAGGTACAATAGTACATACGAATA
CGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGG
GGTCGGCGAGGCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCC
CATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGG
GACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGC
AGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAG
GTAGCTCGGGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGC