Detailed information on CNT30345244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636617Eragrostis tefCapsicum annuum21.294.0788.6853forward
CNT30244654Eragrostis tefAvena sativa98.3911.1285.31245forward
CNT30135452Eragrostis tefLolium perenne66.2744.4783.03165forward
CNT30680825Eragrostis tefTriticum urartu87.9543.1183.56219forward
CNT30364646Eragrostis tefSorghum bicolor63.0514.384.71157forward
CNT30107267Eragrostis tefOryza longistaminata28.9229.2793.0672forward
CNT30329128Eragrostis tefDioscorea rotundata30.522.9985.5376forward
CNT30592821Eragrostis tefEragrostis curvula37.7543.9388.394forward
CNT3040161Eragrostis tefMarchantia polymorpha35.746.1885.3989forward

Expression of CNT30345244

Peptides detected in this lncRNA

>peptide 1 (82 aa)
RVVLQLVGQVVSVLGLSVHDLTEHSRQHLGKDGKNVRLEEHRGRKSRAHGRAVHHGKTFLGLQLEEASLNARNLERLSGVNLA

>peptide 2 (68 aa)
GWCFSLWVRWSVYSGFPFMTSQNTADNTSARMARMFASKSTVDASPEPTAVPFTMARPSLGCNSKKPP*

Sequence

>CNT30345244
CGGGTGGTGCTTCAGCTTGTGGGTCAGGTGGTCAGTGTACTCGGGCTTTCCGTTCATGACCTCACAGAACACAGCAGACAACACCTCGGCAAGGATGGCA
AGAATGTTCGCCTCGAAGAGCACCGTGGACGCAAGTCCAGAGCCCACGGCCGTGCCGTTCACCATGGCAAGACCTTCCTTGGGCTGCAACTCGAAGAAGC
CTCCCTGAATGCCCGCAATCTTGAACGCCTCAGCGGCGTTAACCTTGCT