« Back to Eragrostis tef search


Detailed information on CNT30345068


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377016Eragrostis tefArabidopsis thaliana9.2822.884.3483forward
CNT30297329Eragrostis tefTriticum aestivum17.1165.6790.2153forward
CNT30223861Eragrostis tefHordeum vulgare14.3222.5489.84128forward
CNT30136123Eragrostis tefLolium perenne13.9823.0692.8125forward
CNT3068263Eragrostis tefLeersia perrieri18.2321.4291.41163forward
CNT30128108Eragrostis tefCorymbia citriodora18.932.3185.21169forward
CNT30150970Eragrostis tefBrachypodium distachyon18.2367.6387.73163forward

Expression of CNT30345068

Peptides detected in this lncRNA

>peptide 1 (38 aa)
LICKICSNQIHISHRHLSTHVCPQNTDGRQGNKALEIM*

>peptide 2 (31 aa)
MPRVGALVHGVQVLGSLHLRLATRQELQVFF*

>peptide 3 (53 aa)
MMPGTAGGILLWRSLRVYSATCSGVALSLLSAPGVTMLGLRRMPSNMTLFSAM*

>peptide 4 (44 aa)
MAFKFWVASTSDWPPDRNCRFFFKSQVRTWFAFFLAKCTRGDRN*

Sequence

>CNT30345068
TTAATATGCAAAATTTGCAGTAACCAAATCCACATTTCACATAGACATTTGTCTACTCATGTTTGTCCGCAAAATACAGACGGCAGACAAGGTAACAAGG
CTCTAGAAATCATGTGAATGCAGTAACATTCCAAGTTTCCCACTTAGTAGGGTGGTAAAAAACGCAGTGTATTTTGTCCATCTGAACCTGTAACTGCCTA
CAGTGCCCTCAAGGTGCTAGCAGTGTATCATCTTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCAGCAGCCTCACCGTCGCTGGTGTACT
TGCCGAGCTGAGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTCAAGTTCTCGGGCCGGCCACCCCATGTCTTGAGGCAGGG
AGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTCAAGTTCTCGGGCCGGCCACCCCATGTCTTGAGGCAGGTGTTCTGGAGAGCCCTGGC
GTAGGAGAAGGACACATGCCACGGGTTGGCGCCCTGGTTCATGGCGTTCAAGTTCTGGGTAGCCTCCACCTCAGACTGGCCACCAGACAGGAACTGCAGG
TTTTTTTTTAAATCACAGGTCAGAACATGGTTTGCATTTTTCTTGGCCAAATGTACAAGAGGAGATAGAAACTGACCATGATGCCAGGGACAGCCGGGGG
GATCCTTCTGTGGAGGAGCTTGAGGGTGTACTCAGCCACTTGCTCAGGGGTAGCCTTGTCCTTGCTCTCGGCACCAGGGGTGACCATGCTGGGCTTGAGG
AGGATGCCCTCAAACATGACGTTGTTCTCAGCCATGTAGTAGAAGGTCTCGGCCCAGACCTTCTGCGCAACCTCGAAGGTTCTCTCAATGCCGT