Detailed information on CNT30345063


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 5e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Eragrostis tefOryza sativa10020.9888.36275forward
CNT30258087Eragrostis tefAvena sativa99.2758.3386.81273forward
CNT30216367Eragrostis tefKalanchoe fedtschenkoi6851.6683.96187forward
CNT30319836Eragrostis tefAsparagus officinalis63.6421.9380.57175forward
CNT30582028Eragrostis tefEchinochloa crusgalli63.2724.4491.38174forward
CNT30117905Eragrostis tefOryza nivara10023.8188.36275forward
CNT30604735Eragrostis tefOryza punctata65.4521.3587.22180forward

Expression of CNT30345063

Peptides detected in this lncRNA

>peptide 1 (54 aa)
TMMPGTAGGILLWRSLRVYSATCSGAALSLLSAPGVTMLGLRRMPSNMTLFSAM*

>peptide 2 (90 aa)
DHDARDSRGDPSVEELEGVLSHLLRGSLVLALGTRGDHAGLEEDALKHDVVLSHVVEGLGPDLLRNLEGSLNAVLTVQQDFRLNNWHQTVV

Sequence

>CNT30345063
GACCATGATGCCAGGGACAGCCGGGGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTACTCAGCCACTTGCTCAGGGGCAGCCTTGTCCTTGCTCTCGGCA
CCAGGGGTGACCATGCTGGGCTTGAGGAGGATGCCCTCAAACATGACGTTGTTCTCAGCCATGTAGTAGAAGGTCTCGGCCCAGACCTTCTGCGCAACCT
CGAAGGTTCTCTCAATGCCGTGCTCACCGTCCAGCAGGATTTCAGGCTCAACAATTGGCACCAGACCGTTGTCCT