Detailed information on CNT30344971


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LRR5|DRL21_ARATH, E-value = 7e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521356Eragrostis tefSetaria italica7.0829.6284.83178forward
CNT30553900Eragrostis tefOryza glaberrima7.9628.4583200forward
CNT30367873Eragrostis tefSorghum bicolor2.8735.1287.572forward

Expression of CNT30344971

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVGDNITKLARNTSKLLLGSEKNDLNVVGDLK*

>peptide 2 (38 aa)
MMLLLCQQASFLDYRNRISLIFAKWQGALLEKSEGYHN*

>peptide 3 (62 aa)
MSSNTSSFSDGNPLISLVPENSLLISVMARKPPVSKNLSSGSAPSAGRIKQFGQSDRWIVCK*

>peptide 4 (62 aa)
MYSSFNDCGKPCSGKHGIRGHCKMVIAVKHDASSMPAGKLPRLPQQNISNFCKVAGSFTGKK*

>peptide 5 (47 aa)
MSCDPLHCLQFTDYVSFVLTDNKFLQLLKATQVPYSSDVSDQLCSCF*

>peptide 6 (47 aa)
MARFVKEISLISLRRGLIRLEHELMHRSSSMEGSKLLSWGGASFGQS*

>peptide 7 (48 aa)
MPGVSCTAASVWRVIQPKAFVSRDTLYKVMHSIMHHISTLVMLEEGFA*

>peptide 8 (53 aa)
MHAFSLSKASFASPALATFSSLKMDICPVIPFIAFNSLIMYLLSLRTTNSSNC*

>peptide 9 (68 aa)
MSRRFKSNTWRYFNLRNRSPGIRLENDRCLAFLALLLLCGGSSSLRHSSVETHCTRSCIASCITYPLL*

Sequence

>CNT30344971
CCGATACTCAACTATGGGATATTTTCATCAAAATTTTGGCAAATCTATTAGTACCCTAAAAACTATTATTCTATAAACCTGTTGCTATTACGTGGCCATG
GTTGGTGACAATATCACTAAACTTGCTCGTAACACATCTAAACTCTTATTGGGTTCTGAGAAGAATGACTTGAATGTGGTTGGTGATCTGAAGTAAAATG
TTGCGGATATGGATCCTTTTTTAGAACATCAAAATTAGGATTTCATAGTAAACGAGGCAGACAATGTTGTCCTTTCTTGGTTCATTTTAGTTTGCTTGTT
GCACTGTTAACTATCCCTCTAGTTGCAATATTCTAAGGTATAGTTTGCTTTTACTTCTTGGATATTAATATTGTTTCTGATTTTTGGCATGGGTTTATGA
TTATAACATGCTTCTTACCACGGACACGACATATAAGATACATTTATAGTGATAAGCATGTGCCAATGTGCAGCATAGATTAAAACGGGAATATACAAGC
ACCTGCCAAGGATATGTTTTGCTTTTAGATATATCCAGAAAAAAAATCAGGAGATGTATCTAGTTCATACCGTTCTGTTGTGTTGCTATGATGCATTCAG
TGTAATCTTCTTGTAAAGCTCCATTCATTCGTGGTACTATCATCTTCTATCTCTATAGTTGGTACATGAGCAATTTTTAGCTAATCTTGTCCACAGTTAT
CTTGACAACTCTCTGCTAGCAGCGGGCATTCTTTGATGTACAGTTCTTTCAATGATTGTGGCAAGCCTTGTTCTGGCAAGCATGGTATAAGAGGGCATTG
CAAAATGGTCATAGCTGTTAAACATGATGCTTCTTCTATGCCAGCAGGCAAGCTTCCTAGATTACCGCAACAGAATATCTCTAATTTTTGCAAAGTGGCA
GGGAGCTTTACTGGAAAAAAGTGAAGGGTATCACAATTAGTGATGGCAAGATTTGTCAAAGAGATCTCATTAATCTCTCTAAGAAGAGGGTTGATTAGAT
TGGAGCATGAGCTGATGCATAGATCTTCAAGCATGGAGGGCAGCAAGCTGCTCTCTTGGGGTGGTGCCAGCTTTGGACAATCATAAATATGAATACTCTT
AAGAGAGGTTAGGCCTCTGAATCCTTCAACTGGTAGGTGAGTTAATTCTGGACAGTCTGTGATGGTTAATTGCTGGAGAGCCAATAACTTCTGGCAAAGC
AGTCCTTGTTCTAAGGATACAAGATTTGGGCATTGATGAATCTGTAGCATTCCAATGATAATGTACGTTGAGAAATTGGACTATATTTCTAGTAGAATAG
CAAGGCCTGTTTCAGAAATTTGAGCTTCACTAATGTTGAAGGGAGGAATGGGAATTCTGTTAGCTGTGGGCAGTCTATCACTACAAGTTCTGTGAGGGAT
GGAAGCAATTGAGGGTCTTGGGTGGCTGCCCACCTTCTGAGATTAGGCATGTCTTCAAATACGAGTTCCTTCAGTGACGGAAACCCCTTAATCTCGTTGG
TTCCTGAAAATTCCTTGTTGATTTCAGTAATGGCACGAAAACCCCCAGTATCTAAAAACTTGAGTAGCGGCAGCGCCCCAAGTGCTGGTAGAATTAAGCA
GTTTGGACAGTCAGACAGATGGATAGTCTGTAAGTGAGCAAGACTACTTAACCATTTTGGAAAGTAGAATCCTGCAAATGCCTTGACTGACAACTCACTG
AGTTCATGATGAGGTTGGAGGTGTCTGAGTATCTCAGTTTCTTGAGCTGCTTCTTCTGAATTCAAGGACCTCCCATTAGACCACACAAGATCTAAAGTGT
TAATGCATGCCTTCTCGCTTAGCAAAGCTTCATTTGCCTCCCCCGCACTTGCCACTTTCTCAAGTTTAAAAATGGATATATGTCCTGTGATCCCCTTCAT
TGCCTTCAATTCACTGATTATGTATCTTTTGTCCTTACGGACAACAAATTCCTCCAACTGTTGAAGGCTACTCAAGTTCCCTATTCCAGCGATGTCAGTG
ATCAGCTCTGTTCTTGCTTCTAAGCATTTGAGATTTACAAGATTGGTTATGTTCTTTGGGAGGTAATCCAATACATGGTAGTTTTGTAACTTAAGTGTTT
GTAAGTTGAATAGTTTGCCAATTGATGAAGGCAGCACGGTTATTTCAGTACCCGAGAGATTCAAGTACCGAAGCATTTTTAAGTTCCCAATAGTATCTGG
CAGCATAGTAATGTCTCGTCGGTTCAAATCCAACACATGGAGGTACTTCAACTTGAGAAACAGATCACCGGGGATAAGGCTGGAGAACGATAGATGCCTG
GCGTTTCTTGCACTGCTGCTTCTGTGTGGAGGGTCATCCAGCCTAAGGCATTCGTCAGTAGAGACACACTGTACAAGGTCATGCATAGCATCATGCATCA
CATATCCACTCTTGTAATGTTGGAAGAAGGATTTGCTTAGCAATTCGTCAAAATAGCCACTCCCAATTTCTTCCACTCTTCTCCTTCCTTGAGGTTGAAT
GAATCCAAGGGCC