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Detailed information on CNT30344611


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30256907Eragrostis tefAvena sativa16.9748.2587.68138forward

Expression of CNT30344611

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MNTVHTPSSTAPLVSSPPLISSVAIVSAQGEIDLGMMMSPMLLCHGSARWVARFSSGPVRGLATGDGGPLLRLHPVAQAQSLRHQDPGLHN*

>peptide 2 (67 aa)
MVTRPEVVALAQNGRRGXXXXXXLDDAIAIAACLLLPLVCRCPRRREEEEGEGLFESRAESEAAIKGT

>peptide 3 (66 aa)
LQLYNTILLSGQRVAKQFLDACIDMQRLIINRSTHEHGPHSQQHSSSCLVSSSHQLGRDRFSSRGD*

Sequence

>CNT30344611
CTTCAGCTTTACAATACAATTTTGCTTTCCGGACAGAGAGTCGCCAAACAGTTCCTGGACGCATGCATTGATATGCAGCGCCTAATAATCAACCGATCCA
CACATGAACACGGTCCACACTCCCAGCAGCACAGCTCCTCTTGTCTCGTCTCCTCCTCTCATCAGCTCGGTCGCGATCGTTTCAGCTCAAGGGGAGATTG
ATCTCGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGGGTGGCCAGGTTCTCCAGCGGCCCGGTACGTGGCCTGGCCACCGGGGA
CGGCGGCCCACTCCTGCGCCTTCACCCAGTTGCCCAGGCCCAGAGCCTCCGGCACCAAGATCCCGGGCTGCACAATTAAGTCACACAAGAATGATCAGAT
CCATGTTGCTGACACGGCTGGCGGCTCATCATGTCATCATCTCTGCTATGCTACTACTAGTATTAATGTAGCGAGAAACACGGCGGCGTACCACGGCGAG
CATGGCCCAGCGGCAGTGGTAGACCTCCGACTCCTTGAACCGCTCAAAGTTCTCCGGCACGGTGGCGAGGTGAGCGGGGCGTGGCTGGCCGGGCATCCAC
TCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGCTGGCGCAGAACGGCAGGCGCGGCNNNNNNNNNNNNNNNNNNCTCGACGACGCCATCGCCATTG
CTGCCTGCTTGCTGCTTCCTCTGGTCTGCCGATGCCCACGTCGACGGGAAGAAGAAGAAGGGGAAGGTTTGTTTGAGAGCAGAGCAGAATCTGAGGCTGC
TATTAAGGGCACG