Detailed information on CNT30344605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364335Eragrostis tefSorghum bicolor32.278.1492.9671forward
CNT3034379Eragrostis tefTheobroma cacao38.1810.7786.984forward
CNT3058384Eragrostis tefAmborella trichopoda60.9128.0984.33134forward
CNT3037560Eragrostis tefCucumis melo21.364.4893.6247forward
CNT30102128Eragrostis tefOryza rufipogon7528.594.55165forward
CNT30576871Eragrostis tefOryza barthii7519.1994.55165forward
CNT3040262Eragrostis tefMarchantia polymorpha39.0911.4588.3786forward

Expression of CNT30344605

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MRRRGTSSSRGPSPWCAGARRRRWRRTRSPGWWAASPTAPGCPGTWPGRGGRTR

>peptide 2 (71 aa)
LSLYSSNFLGSLENPSGSNAPPGYFFFSGSFSMVRWCSAKAMATNSITRMVGSEPHGTGLPRYVAWPRGSNP

>peptide 3 (72 aa)
LELVLLELFGVLGESERVECAAGVLLLLGVLLHGALVLGEGDGDELDHQDGGQRAPRHRVAQVRGLAEGVEPE

Sequence

>CNT30344605
CCTTGAGCTTGTACTCCTCGAACTTTTTGGGGTCCTTGGAGAATCCGAGCGGGTCGAATGCGCCGCCGGGGTACTTCTTCTTCTCGGGGTCCTTCTCCAT
GGTGCGCTGGTGCTCGGCGAAGGCGATGGCGACGAACTCGATCACCAGGATGGTGGGCAGCGAGCCCCACGGCACCGGGTTGCCCAGGTACGTGGCCTGG
CCGAGGGGGTCGAACCCGAA