Detailed information on CNT30344603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673696Eragrostis tefSetaria viridis31.2728.789.17157forward
CNT30521727Eragrostis tefSetaria italica30.2823.995.39152forward
CNT30669606Eragrostis tefTriticum dicoccoides25.523.4993.75128forward
CNT308481Eragrostis tefZea mays31.8727.5988.75160forward
CNT30102355Eragrostis tefOryza rufipogon30.4825.8492.81153forward
CNT30580110Eragrostis tefEchinochloa crusgalli30.2822.6995.39152forward

Expression of CNT30344603

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MNTVHTPSSTAPLVSSPPLISSVAIVSAQGEIDLGMMMSPMLLCHGSAR*

>peptide 2 (62 aa)
NTILLSGQRVAKQFLDACIDMQRLIINRSTHEHGPHSQQHSSSCLVSSSHQLGRDRFSSRGD*

>peptide 3 (74 aa)
MVTRPEVVALAQNGRRGXXXXXXLDDAIAIAACLLLPLVCRCPRRREEEEGEGLFESRAESEAAIKGTTGRRRGG

Sequence

>CNT30344603
AATACAATTTTGCTTTCCGGACAGAGAGTCGCCAAACAGTTCCTGGACGCATGCATTGATATGCAGCGCCTAATAATCAACCGATCCACACATGAACACG
GTCCACACTCCCAGCAGCACAGCTCCTCTTGTCTCGTCTCCTCCTCTCATCAGCTCGGTCGCGATCGTTTCAGCTCAAGGGGAGATTGATCTCGGGATGA
TGATGTCGCCGATGTTGTTGTGCCACGGGTCGGCGAGGTGAGCGGGGCGTGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGT
GGCGCTGGCGCAGAACGGCAGGCGCGGCNNNNNNNNNNNNNNNNNNCTCGACGACGCCATCGCCATTGCTGCCTGCTTGCTGCTTCCTCTGGTCTGCCGA
TGCCCACGTCGACGGGAAGAAGAAGAAGGGGAAGGTTTGTTTGAGAGCAGAGCAGAATCTGAGGCTGCTATTAAGGGCACGACCGGCCGGAGACGAGGCG
GG