Detailed information on CNT30344601


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Eragrostis tefSetaria viridis21.8922.1896.21132forward
CNT30567058Eragrostis tefActinidia chinensis22.2237.2287.31134forward
CNT30236705Eragrostis tefBrassica oleracea18.7423.9984.96113forward
CNT30609040Eragrostis tefGossypium raimondii19.926.0990120forward

Expression of CNT30344601

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRRRGTSSSRGPSPWCAGARRRRWRRTRSPGWWAASPTAPGCPGTGSNPKSLQRETQESVMGHMSVRDSVIDF*

>peptide 2 (70 aa)
MVTRPEVVALAQNGRRGXXXXXXLDDAIAIAACLLLPLVCRCPRRREEEEGEGLFESRAESEAAIKGTTGR

>peptide 3 (94 aa)
PFLISLSLYSSNFLGSLENPSGSNAPPGYFFFSGSFSMVRWCSAKAMATNSITRMVGSEPHGTGLPRYGVEPEVPAERDTRVSHGPHVCQRLSD*

>peptide 4 (92 aa)
VLDLLELVLLELFGVLGESERVECAAGVLLLLGVLLHGALVLGEGDGDELDHQDGGQRAPRHRVAQVRGRTRSPCRERHKSQSWATCLSETQ*

Sequence

>CNT30344601
CCGTTCTTGATCTCCTTGAGCTTGTACTCCTCGAACTTTTTGGGGTCCTTGGAGAATCCGAGCGGGTCGAATGCGCCGCCGGGGTACTTCTTCTTCTCGG
GGTCCTTCTCCATGGTGCGCTGGTGCTCGGCGAAGGCGATGGCGACGAACTCGATCACCAGGATGGTGGGCAGCGAGCCCCACGGCACCGGGTTGCCCAG
GTACGGGGTCGAACCCGAAGTCCCTGCAGAGAGAGACACAAGAGTCAGTCATGGGCCACATGTCTGTCAGAGACTCAGTGATTGATTTTTGAGTGGTATG
CTCTGATCTCGCTTAATTAATTACGTACCCGGGCGAGGAGCCGTCGAGGTGAGCGGGGCGTGGCTGGCCGGGCATCCACTCGGCGGACATGGTGACGCGG
CCGGAGGTGGTGGCGCTGGCGCAGAACGGCAGGCGCGGCNNNNNNNNNNNNNNNNNNCTCGACGACGCCATCGCCATTGCTGCCTGCTTGCTGCTTCCTC
TGGTCTGCCGATGCCCACGTCGACGGGAAGAAGAAGAAGGGGAAGGTTTGTTTGAGAGCAGAGCAGAATCTGAGGCTGCTATTAAGGGCACGACCGGCCG
GAG