Detailed information on CNT30344054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696190Eragrostis tefOryza sativa40.2254.1987.73220reverse complement
CNT30294378Eragrostis tefTriticum aestivum40.2210.7889.09220reverse complement
CNT30224357Eragrostis tefHordeum vulgare37.6613.6488.35206reverse complement
CNT30396291Eragrostis tefTriticum turgidum35.6550.6588.72195forward
CNT30585847Eragrostis tefMusa acuminata25.0520.9885.4137reverse complement
CNT30553747Eragrostis tefOryza glaberrima43.3316.6586.5237forward
CNT30657116Eragrostis tefTriticum dicoccoides21.3932.0594.87117reverse complement
CNT30229743Eragrostis tefAnanas comosus18.2842.3787100reverse complement
CNT30585629Eragrostis tefEchinochloa crusgalli40.2250.4690220reverse complement
CNT30551824Eragrostis tefOryza brachyantha21.3947.9591.45117reverse complement

Expression of CNT30344054

Peptides detected in this lncRNA

>peptide 1 (42 aa)
WTQRILSTIRNSEELRRGTLEQLEKARLRLQKVELEADEYRG*

>peptide 2 (58 aa)
MIDRRKKNKKDIRFQCVWSMNYIIKGNVIKHQYNKIIKKKERSLMFTKTTHFIFPLKS*

Sequence

>CNT30344054
TGGACACAGAGGATCTTAAGTACTATTCGAAATTCGGAAGAATTGCGTAGAGGCACCCTTGAACAACTCGAAAAAGCTCGGCTTCGATTACAGAAAGTCG
AACTAGAAGCGGATGAGTATCGGGGATGATAGATAGAAGGAAGAAGAATAAGAAAGATATAAGATTCCAATGTGTATGGTCTATGAATTACATCATAAAA
GGCAATGTTATAAAGCATCAATATAATAAAATAATAAAAAAAAAAGAGAGAAGTTTAATGTTCACCAAAACAACTCACTTTATCTTTCCTTTGAAATCAT
AATTTGGAAACAATAAATAAAAATTTAAAGCAATAATAAAGAGCAGCCCGGGTTAATAAAACTGAGAGAATTAACTCGGAAAGTTTGGAAGCTCCATTGC
AGGATTCAAACCTAACCATTAAAGGAGAAGCTGTGGGAACGACAAAACCTATGACTGCATAGGATTGATTTTATTGAAAAGAATCCTAATACTTCATTGG
GTGGGATGGCGGAACAAACCAAAAAAATTGCTTTATTTGTTAAATTT