Detailed information on CNT30343859


BLAST search results

BLAST vs Swiss-Prot:
sp|P27789|FER5_MAIZE, E-value = 6e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695475Eragrostis tefOryza sativa28.2328.490.43188forward
CNT30596694Eragrostis tefOryza meridionalis21.0216.6590140forward
CNT30370928Eragrostis tefOryza glumipatula34.9828.9890.99233forward
CNT30117470Eragrostis tefOryza nivara34.2326.0390.79228forward

Expression of CNT30343859

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLHKHGNTYLTQFVVRLDKHNNINWLQCK*

>peptide 2 (29 aa)
QALKEYITCIILFDATQQACQIYIKSSSP*

>peptide 3 (35 aa)
MSRRGTSREGQPLPPPPGPGCTRRRAPEAPPHRPG*

>peptide 4 (36 aa)
MLRNKHAKYTSNHRLHKLNNIVCDANKKNTHRETRI*

>peptide 5 (73 aa)
MPNIHQIIVSINSTTLFAMQIKKTHTEKHVYRDICYTSMVIRTSLNSSYVSINTTTLIGCNANKKYRETHIDT*

Sequence

>CNT30343859
CAAGCATTAAAAGAGTATATAACATGCATAATATTATTTGATGCTACGCAACAAGCATGCCAAATATACATCAAATCATCGTCTCCATAAACTCAACAAC
ATTGTTTGCGATGCAAATAAAAAAAACACACACAGAGAAACACGTATATAGAGATATATGCTACACAAGCATGGTAATACGTACCTCACTCAATTCGTCG
TACGTCTCGATAAACACAACAACATTAATTGGTTGCAATGCAAATAAAAAATACAGAGAAACACATATAGATACTTAGCAAGGCAGCACAATACTTCAAT
TCATCATGAGGTGAGCTCCTCCTCCTTGTGGGTCTCAATGACGAGGTCGGAGGTCGGGTAGGCGGCGCAGGTGAGGACCCAGCCGGAGGCGACCTGGTCG
TCGTCAAGGAAGCTCTGGTCGGACTGGTCGACGGAGCCGGACACCACCTTGCCGGCGCAGGAGGAGCATGAGCCGGCGCGGCACGAGTAGGGAAGGTCAA
CCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCGGGCACCTGAAGCTCCACCTCACCGTCCGGGGTGATGAGCTTCACGTTGTAGGTCGCCTG
CGCGCGCAGCCTGGCGCCGCGGGGCATGGCGGTGGCGGGAAGCGCCACGGGGGGCCGCGCCGCTGG