Detailed information on CNT3034379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515355Theobroma cacaoJuglans regia26.0333.0184.73203forward
CNT30375299Theobroma cacaoArabidopsis thaliana13.5927.1183.96106forward
CNT30525458Theobroma cacaoPhaseolus vulgaris30.3813.0783.97237forward
CNT30629625Theobroma cacaoVigna unguiculata10.3821.691.3681forward
CNT30567058Theobroma cacaoActinidia chinensis13.7229.7290.65107forward
CNT30588696Theobroma cacaoMusa acuminata14.8743.1286.21116forward
CNT30236705Theobroma cacaoBrassica oleracea22.3136.9479.31174forward
CNT30263158Theobroma cacaoBrassica rapa9.2328.4687.572forward
CNT30609040Theobroma cacaoGossypium raimondii26.9245.6588.57210forward
CNT30344605Theobroma cacaoEragrostis tef10.7738.1886.984forward
CNT30360105Theobroma cacaoLactuca sativa23.7221.0279.46185forward
CNT3058384Theobroma cacaoAmborella trichopoda18.8530.8281.63147forward
CNT3037808Theobroma cacaoCucumis melo27.5629.4981.4215forward
CNT30102128Theobroma cacaoOryza rufipogon14.8720.0384.48116forward
CNT30580151Theobroma cacaoEchinochloa crusgalli22.1832.8379.77173forward

Expression of CNT3034379

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSMPLFYYHRARLPIFHECLLKKLTKSHIIV*

>peptide 2 (51 aa)
LEYPKGSKAPPGYFFLSVSFSMLRWCSTKAMAKNSMTKMIGRVPHGTGLPK*

>peptide 3 (91 aa)
LGVSQGIKSTTRVFLPLGVLLHAALVLNEGDGEEFDDQDDREGTPWNRVAQVSGLSTRNCRPFLSLYPVSIPQSLWYQDTRLQSLHSSELS*

>peptide 4 (35 aa)
WSIPRDQKHHQGISSSRCPSPCCVGAQRRRWRRIR*

>peptide 5 (62 aa)
MEQGCPSKWLVHQELPPILEPLPSFHTPKPLVPRYQAAKFTLIRIELKLQVSQDEHASLLLS*

>peptide 6 (30 aa)
MLAQKINKIAYHSVILYHRKFTFQQLYIKN*

Sequence

>CNT3034379
CTTGGAGTATCCCAAGGGATCAAAAGCACCACCAGGGTATTTCTTCCTCTCGGTGTCCTTCTCCATGCTGCGTTGGTGCTCAACGAAGGCGATGGCGAAG
AATTCGATGACCAAGATGATAGGGAGGGTACCCCATGGAACAGGGTTGCCCAAGTAAGTGGCTTGTCCACCAGGAATTGCCGCCCATTCTTGAGCCTTTA
CCCAGTTTCCATACCCCAAAGCCTCTGGTACCAAGATACCAGGCTGCAAAGTTTACACTCATCAGAATTGAGCTAAAGCTTCAAGTAAGCCAAGATGAGC
ATGCCTCTCTTTTATTATCATAGAGCTAGGTTACCTATTTTTCATGAATGCTTGCTCAAAAAATTAACAAAATCGCATATCATAGTGTAATTCTATACCA
TAGAAAATTCACATTTCAACAGTTGTACATTAAAAACTGAAAGTGTCAAACAGGAAAATTACAGATTTAAGAGTGAAAAATCAACTTACAACAGCAAGCA
TAGCCCATCTGCAGTGAATCAACTCAGACTCCTTGTACCTCTCAAGGTTCTCTGGGACCTCACCGAGCCTTAGTGGGTCAAATCCAAAGTCACTGAAAAA
CACAAAACAAAGCTTTTTTCAACATTTATCTAAAAGGTACAAAACAAACCAATTATTCTATTTTAGCTACTTTGAAACCTTACCCTGGTGCTGAGCCATC
AAGGTAAGGAGGAGAGGACTGAAGGGAATGCGGTGGCTATGCCACAGCTCATGAGTGTGTTGGCAGCCATGGTCTTTTTG