CANTATAdb - search

Detailed information on CNT30343733

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30117119	Eragrostis tef	Oryza nivara	3.51	26.72	87.1	62	forward

Expression of CNT30343733

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDSSGSSSGPTPIYLKESVCVITDNYIESIRSIYSYNEN*

>peptide 2 (32 aa)
MIEKIQQKHHSFSEDDVQPVHHVTLLQAKVFC*

>peptide 3 (31 aa)
MAVLGITGSLRHLLPEGDDEIFSGTSSFKVD*

>peptide 4 (47 aa)
MKEMILLTYHVLPLSTVPQNKKLIHPKNQTLEPNLFLQFQMNNTEMK*

Sequence

>CNT30343733
GCAGAACTCCCAGTCTAAATCGCGAGTAGTTAAGCCGTGATTAGACGATGGTTACTGTAGCATCACTGTAGCAAAACATAGATTAATAAGGCTCATTAGA
TTCGTCTCGCAAAGATGTACCCATCTGTAAAAAAGTTTTGTCATTAGACTTTATTTAGTACTCTTAAATAATACACCGAACGCGCCCTTAGTATTGCTTG
TTTCGTTCTTGGGCTCAACTAACTTGGTTTGGTATGTGGTAGTGATGGCAGTTCTGGGTATTACTGGATCACTTCGGCATCTTTTGCCAGAGGGTGATGA
CGAGATTTTCTCTGGTACTTCCTCATTTAAAGTAGACTAATCAGACATTTTTTCAGCAGATCCTCTTGCCTGGAGATTTCGTTTGAAAGACTTCAAGGCG
ACCTCACCAGCAGACCTCTTCCATTTTTGAGAAGTGGATCTAACTCTTCGCCACTTTTGCATGGCAGGATCACTGGGCTGTGCATGAAGACAAGGTTGCT
TATCATATGAAACACGGCGCATCTACAGTAAAAAAGTTTCAACCCATCAGTACACTGAAACATAATGAATGAAGGAAATGATCTTATTGACATATCATGT
GTTGCCACTCTCAACTGTGCCCCAAAATAAGAAACTGATACACCCGAAAAATCAGACACTAGAACCAAACTTGTTTCTGCAGTTTCAAATGAATAACACT
GAAATGAAATAAATAATAACAACAATTAAATAAGACTATCGCATCACACGTATGCATAAGGAATGCAAATAAAGTATGAAAAGATAATATCAAGCTTATA
TAAAATGCATCAAGTAGAGAACAAACTACCGAGGTAAGTTTCAAACAGTGAGCATTCAAACTGAATCATCAAATATAGAAGAACACTAAATTACAGCACA
TTTATATTTTCACAGATCATGAAGGTCACAGTTTTCGTTGACAAATATTTAGCTAGCAACCTTAAAATTGTGTGAAATCCTTCCATGCCATTGATCGTTG
AAAGTTGATGGATAGCAGCGGCTCCTCTTCTGGCCCGACACCAATTTATCTAAAAGAGAGTGTGTGTGTGATCACTGACAATTACATCGAGTCGATAAGA
TCAATTTATTCATACAACGAAAACTAAAATGTGCACAATAACTCAGGAAAAGTAACGCTTCACAAAATCAAGAACAGCACAATGCTACATATAAAAGTAG
AGCACAGATAGCTACATATATAGGCTGAAATAACTTCAGAATTTTTATTTCCTCAAGAAAAAGAAACTTCTGGATTTCTGGGTCACTTAACCTACCAAAA
AAACACATCCTTCTTTAAGATGCAGAGGGGATAAAAAGATAATAATACCAACTATGGGTGAATCAAAGAAGATATATGATTTGCATGTTTGCTTGGATGG
AAATGGAATAGCATATAGCAATATGGATATATAGGGCTCAAAAGACAAAGTCAAAGTTTCAGTTCAATAAATAAATAAATAACGCCGAAATCGAAGTAAG
TCACAGTTTAGGCAGCACAAACCTGCGAGCTCTTATAGCAGATGGAAATCCCCAGGGATATATTAAGCACAAAATCTTAACAAAATAATCTGATAGTTAC
ACAAATATAGACCAATGTACCTTCTTTAGATGATTGAGAAAATCCAACAGAAGCATCACAGTTTTTCTGAAGATGATGTCCAACCGGTTCATCATGTAAC
TCTTCTTCAAGCAAAAGTTTTCTGTTAACAAATGAATTACCCTGTGGGCTAGCCGAGTCCAACCC