Detailed information on CNT30343308


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 4e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Eragrostis tefSetaria italica10036.5390.88274forward
CNT30500451Eragrostis tefCoffea canephora87.2322.482.01239forward
CNT3021247Eragrostis tefCitrullus lanatus62.0418.4681.18170forward
CNT30729539Eragrostis tefCorchorus capsularis90.8837.0581.53249forward
CNT30524728Eragrostis tefPhaseolus vulgaris83.2142.2283.77228forward
CNT30506399Eragrostis tefNicotiana attenuata77.3764.0581.13212forward
CNT30223417Eragrostis tefHordeum vulgare80.6697.3690.05221forward
CNT30590847Eragrostis tefMusa acuminata98.5459.0882.59270forward
CNT30510767Eragrostis tefSolanum lycopersicum55.1117.9580.79151forward
CNT30143836Eragrostis tefMedicago truncatula57.6627.182.91158forward
CNT30447453Eragrostis tefSaccharum spontaneum10047.8290.51274forward
CNT30231964Eragrostis tefAnanas comosus32.127.2185.2388forward
CNT30360575Eragrostis tefLactuca sativa77.3735.1682.08212forward
CNT30411763Eragrostis tefPapaver somniferum46.7211.3684.38128forward
CNT30645151Eragrostis tefCannabis sativa58.7616.8982.61161forward
CNT3054595Eragrostis tefAmborella trichopoda66.4287.9282.97182forward
CNT30319856Eragrostis tefAsparagus officinalis62.0460.7185.88170forward
CNT30579496Eragrostis tefEchinochloa crusgalli97.8168.5490.67268forward
CNT30499107Eragrostis tefDigitaria exilis10070.0891.24274forward
CNT30336663Eragrostis tefCynara cardunculus71.5341.9781.12196forward
CNT30726386Eragrostis tefLupinus angustifolius58.0317.6981.76159forward

Expression of CNT30343308

Peptides detected in this lncRNA

>peptide 1 (48 aa)
TYWIHMAPVALLLRMLERITIHLAGTGQQEPGPNSFGQAQHIQCPHHI*

>peptide 2 (50 aa)
HLLDSHGPSSSPSADAREDHHTPRWYWSTRTGPQLFWPSPAYSVSPSHLI*

Sequence

>CNT30343308
CACCTATTGGATTCACATGGCCCCAGTAGCTCTCCTTCTGCGGATGCTCGAGAGGATCACCATACACCTCGCTGGTACTGGTCAACAAGAACCGGGCCCC
AACTCTTTTGGCCAAGCCCAGCATATTCAGTGTCCCCATCACATTTGATATGATGGTCTTGATGGGGTTGAATTTGTAGTGCACGGGGGAGGCAGGGCAC
GCGAGGTGGTAGATCTGGTCGACCTCGAGGAGGATGGGCTCGACGACGTCGTGGCGGATGAGATCGAAGCGCGG