CANTATAdb - search

Detailed information on CNT30343298

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30446079	Eragrostis tef	Saccharum spontaneum	36.87	28.46	89.11	257	forward

Expression of CNT30343298

Peptides detected in this lncRNA

>peptide 1 (38 aa)
PGCSFRNMHALSDKCCLAQQGAPMKLTFWQKHSALPQK*

Sequence

>CNT30343298
GCCTGGATGCAGCTTTCGTAACATGCATGCCTTGTCAGACAAGTGTTGTCTGGCACAGCAAGGAGCGCCAATGAAATTAACATTTTGGCAAAAGCACTCT
GCGCTACCACAAAAATGAGCCAAGTTAGGATGAGTCCCACGAACGAAGCACGCAACTGGCGGTATAGCTGCCAATAGCAAAAAGGCAACGTCATCCAGCA
AAGTAGCAAATTAACCTGTGTCAGCTACGGAACCTGCTTCAAGTTTTCACCAAAGCATCAGCATCCCTCCTTGACTGTTGCTCACCTACTCCTAGTAGAT
GTTTGGCACTAACATATCCAAACTTCTTTACAAGCAGCAGAAAACACAGCACATCAGCTTAGTCTTGCCTCCATACAAGTAACACAAGTGCTTTTAAATA
GTGAAACTTCCAAACAGACTCCTTGATATTCAGAATTTTCCTGGCTGGAGAAGGAAATCGCCTCAGGTCAATTTGGCAACTTCATCCATCCATAATCAAT
ATATCTACAACTAACAGATTGTTTCACACGAGGTAACAGGAAAGGGGAAAAAAATCAGGCACTTGCCATGAAGAGTTACTTCCAGACGAATACAGTTAGG
TATGATATTATTTGATTCCTCGGGTAGAAGTAGCCAACCAAATCCTGCCTCCAAGCATAGCACTTGCATGCTGATGTCGTGATGTTGCCCAGAAGCA