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Detailed information on CNT30342802


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01548|PER2_HORVU, E-value = 8e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693017Eragrostis tefOryza sativa23.410.7290.21143forward
CNT30221586Eragrostis tefHordeum vulgare8.0224.0293.8849forward

Expression of CNT30342802

Peptides detected in this lncRNA

>peptide 1 (32 aa)
DAIRHYSRHRWCVEKTRETSDGEGDDHQIQID*

>peptide 2 (47 aa)
MQFVITPGTGGALKRLEKQVTEKEMIIRFRLIDPYCYHSRKTKHKCA*

>peptide 3 (37 aa)
MVALALGRAQLRRISPALPVRTSIWLILTMDLENWSK*

>peptide 4 (44 aa)
MVLSTLGGRRSLKEEQWPRPMVCAPDSATRSSVSRLRFLNTPRSS

Sequence

>CNT30342802
TGATGCAATTCGTCATTACTCCAGGCACCGGTGGTGCGTTGAAAAGACTCGAGAAACAAGTGACGGAGAAGGAGATGATCATCAGATTCAGATTGATTGA
TCCTTATTGTTACCACTCCCGGAAAACAAAACACAAATGCGCTTAGTTAGAAGCAAAAGCTTCAAGGTAGCACGAGTGGAGTAGCTAGGTAGCGCTCCTG
CTTAGTTAGGCGTCGGCGGCGAGGCCCTGGTCGTCGTCGTTGGCGGTCTGAATGGTGGCTCTGGCGTTGGGTAGGGCGCAGTTGCGTCGGATCTCTCCGG
CGTTGCCAGTGAGGACGTCCATCTGGCTCATCTTGACCATGGACCTGGAGAACTGGTCGAAGTAGTACTTGTTGTCGAAGGCGTCGGGCGTGCGCACGTC
GAGCGGCTGCGTGACCGTGTTGCCGGCCGGGTCGGAGGCGCACTTGGCGGCGAGCTTGGCCCTGAACGCCGGGTCGATGGTGTTGTCCACGTTGGGGGGC
AGGCGGTCGCTGAAGGAGGAGCAGTGGCCCAGGCCGATGGTGTGCGCGCCCGACAGCGCCACCAGGTCGTCCGTGTCCAGGCTGCGGTTCTTGAACACGC
CCAGGAGCTCC