Detailed information on CNT30342600


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224095Eragrostis tefHordeum vulgare27.5339.6888.7898forward
CNT30444291Eragrostis tefSaccharum spontaneum50.8418.6486.19181forward
CNT30595873Eragrostis tefOryza meridionalis31.4624.8983.93112forward
CNT30575883Eragrostis tefOryza barthii46.079.3584.15164forward
CNT30578907Eragrostis tefEchinochloa crusgalli46.9118.4792.22167forward
CNT30558870Eragrostis tefPanicum hallii23.616.0992.8684forward

Expression of CNT30342600

Peptides detected in this lncRNA

>peptide 1 (29 aa)
KCQYRQSWCLARIAAQKRRTISMVIQSSS*

>peptide 2 (81 aa)
MRSGGEGGLCCCRMLTSPVSSFLKAKKSWLTFSSCSSASSTASGGISNTLVRTTLVSTVSSSSAPTASTRSCSASASSSSSS

Sequence

>CNT30342600
CAAAGTGTCAGTACAGGCAAAGCTGGTGTCTCGCTCGCATCGCAGCACAAAAAAGGAGGACTATCTCGATGGTGATACAATCATCTAGCTGAATTAGTTG
CTGTCGCCATGCGCAGCGGCGGCGAAGGAGGGCTCTGCTGCTGCAGGATGTTGACCTCGCCGGTCTCCTCGTTCCTGAAGGCGAAGAAGTCGTGGTTGAC
GTTCTCCAGCTGCTCGAGCGCCTCGTCGACGGCGAGCGGCGGCATCTCGAACACCTTGGTGCGGACCACCTTGGTGAGCACCGTCTCCTCGTCCTCGGCG
CCGACGGCCTCCACCAGGTCCTGCTCCGCCTCCGCGTCGTCGTCGTCTTCTTCAGC