CANTATAdb - search

Detailed information on CNT30342210

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT001497, E-value = 6e-13

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674368	Eragrostis tef	Setaria viridis	26.56	32.49	91.67	192	forward
CNT30454508	Eragrostis tef	Saccharum spontaneum	66.39	65.31	87.92	480	forward
CNT30682025	Eragrostis tef	Triticum urartu	24.34	29.14	81.82	176	forward
CNT30363528	Eragrostis tef	Sorghum bicolor	38.59	28.15	86.74	279	forward

Expression of CNT30342210

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MYVTKDASFRRPYVTHWTLKICMLLASVSEQLQTLPSVGKPERSLLMQFTVNYKDLPHNKNLKP*

>peptide 2 (42 aa)
MSSDCPIAMIFWLISTILSSFLLNSGFSTSRTAGKILAVVRLV

>peptide 3 (50 aa)
MQTLITILDFTIQSSLGRKHQLVFREKNGGDSSRESVNKLGLKFSKINRA*

>peptide 4 (53 aa)
MRDPLKVLHQRDVIRLSNSNDLLVDLNHPVKLSLEFRVLDIQNSREDPCCCAVG

Sequence

>CNT30342210
TCTAAATTCACAAGGTAAAGCCTCATCATAGAGACATAGACAATTGTTTTGCATGGGTTTCTAGTGTTACACGATCAGCAATTTGTACTGGATACATCAT
GCTTTGTTCCATGGTCACATGTACGTTACTAAAGATGCAAGTTTTCGGAGACCATATGTGACACACTGGACTCTAAAGATCTGTATGCTATTGGCTTCAG
TATCAGAACAACTTCAGACGCTACCCTCTGTTGGAAAACCTGAACGCTCACTTCTGATGCAGTTCACTGTCAATTACAAGGATTTGCCACACAACAAAAA
CTTGAAGCCTTAGGCTGCTGAAGTCTCAATATTTTACAGACGAACACAAGAAGATGCAGACCCTCATAACCATCCTGGATTTCACCATTCAAAGCTCCTT
AGGGAGAAAGCACCAGCTTGTCTTTCGGGAGAAAAACGGTGGAGATAGTTCTAGAGAATCAGTAAACAAGCTGGGGCTCAAATTCAGCAAAATCAACAGA
GCCTGACTCAATGGGAGGCATGAGGTATGCGGCAATGAGCTCAGACACCAGCGCAGCAATATGAGGGATCCTCTTAAGGTTCTTCACCAGAGGGATGTCA
TCCGATTGTCCAATAGCAATGATCTTCTGGTTGATCTCAACCATCCTGTCAAGCTTTCTCTTGAATTCAGGGTTCTCGACATCCAGAACAGCAGGGAAGA
TCCTTGCTGTTGTGCGGTTGGTC