Detailed information on CNT30342139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697712Eragrostis tefOryza sativa29.7615.5887100forward
CNT30555884Eragrostis tefOryza glaberrima19.9420.3686.5767forward
CNT30367194Eragrostis tefSorghum bicolor20.2428.6991.1868forward
CNT30371396Eragrostis tefOryza glumipatula29.7614.687100forward
CNT30104684Eragrostis tefOryza rufipogon29.7632.7987100forward
CNT30578372Eragrostis tefOryza barthii29.767.3288100forward
CNT30118058Eragrostis tefOryza nivara29.7618.7387100forward

Expression of CNT30342139

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LLQSVDKLRGKGTETPHLPGMPATVPILRLRTPLQHPWVSVPLPVAYPMHGAIADPT*

>peptide 2 (65 aa)
LVAVGGQAEGEGDGDAALAGDAGDGAHIEAADAVAAPLGERAPARRVPDARRDRRPHLTAGDRRL*

Sequence

>CNT30342139
CTTGTTGCAGTCGGTGGACAAGCTGAGGGGGAAGGGGACGGAGACGCCGCACTTGCCGGGGATGCCGGCGACGGTGCCCATATTGAGGCTGCGGACGCCG
TTGCAGCACCCCTGGGTGAGCGTGCCCCTGCCCGTCGCGTACCCGATGCACGGCGCGATCGCCGACCCCACCTGACCGCAGGTGATCGCCGCCTCTGACG
CCTCCGTCGCCAGCAGCGCAACCACCACGGCGAAGGCGACCAGCAGGGTCTTCTTGCTCAGAGCCATCGATCGAGTCTGCTCTATGTTGACGGAGCTGGT
GTGCGATCGATCACTAGTACTTCTTAGCAAGTTTAC