Detailed information on CNT30341910


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30457622Eragrostis tefSaccharum spontaneum85.3258.9583.33372forward
CNT30363435Eragrostis tefSorghum bicolor94.522.682.04412forward
CNT30107539Eragrostis tefOryza longistaminata31.655.981.88138forward
CNT30574797Eragrostis tefOryza barthii31.6511.481.88138forward

Expression of CNT30341910

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LILLLAPVVLMLLLFSLVLVPSHNCAYPSPTFTQNQQYLMASQAAPRRTSVLPFKPR*

>peptide 2 (73 aa)
ANPSLGSCGVDAPALLPCSCPVSQLCIPVSNLHPESTIFDGQSGGPQENFCSAFQAQMKHHLSWKINEEMNTN*

Sequence

>CNT30341910
CGCTAATCCTTCTCTTGGCTCCTGTGGTGTTGATGCTCCTGCTCTTCTCCCTTGTTCTTGTCCCGTCTCACAACTGTGCATACCCGTCTCCAACCTTCAC
CCAGAATCAACAATATTTGATGGCCAGTCAGGCGGCCCCCAGGAGAACTTCTGTTCTGCCTTTCAAGCCCAGATGAAGCACCATCTTTCTTGGAAAATCA
ACGAAGAAATGAATACCAACTAGTCATTCCTGTTGTGGAAAGAATTCCCCAAATGCTGTGCCTGTGGGAGGCTGTACAACAGTAATCCGGCAGTGAGTAC
CACTGCACCAGCAACAAAGCCAGGTGGTAGAGATGATGCCACACCGATGTATGGCAGTGGTAAGGTGAATGCATAGATGGACAGCGGAACTGCACAAGAA
AACTATCATTAGTGACCAGCTCATATGGAAAGCTAC