Detailed information on CNT30341886


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M12|40C1_ORYSJ, E-value = 1e-39

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522081Eragrostis tefSetaria italica74.9135.0693.1203forward
CNT30554471Eragrostis tefOryza glaberrima73.836.389.5200forward
CNT30439818Eragrostis tefAegilops tauschii74.5467.5687.62202forward
CNT30249006Eragrostis tefAvena sativa73.4322.8787.94199forward
CNT30658643Eragrostis tefTriticum dicoccoides73.4344.9290.45199forward
CNT30444735Eragrostis tefSaccharum spontaneum73.4334.8591.46199forward
CNT30680880Eragrostis tefTriticum urartu73.4338.4990.45199forward
CNT30369862Eragrostis tefOryza glumipatula74.9192.2789.66203forward
CNT30593977Eragrostis tefEragrostis curvula73.890.0996200forward

Expression of CNT30341886

Peptides detected in this lncRNA

>peptide 1 (66 aa)
PSHHFQSTMLVPSRTPPWSLSPWRASKLSRVLFTMRMQRKPWPTSLLSVHSTDSSWASGLNGTSFT*

>peptide 2 (77 aa)
ALAPLPEHDVGAVAHPAVVLVAVEGVEVEPRVVHHADAAEAVADVLALRPQHRLVLGLRVERHQLHLMKRSKIPPCP*

Sequence

>CNT30341886
CGCCCTCGCACCACTTCCAGAGCACGATGTTGGTGCCGTCGCGCACCCCGCCGTGGTCCTTGTCGCCGTGGAGGGCGTCGAAGTTGAGCCGCGTGTTGTT
CACCATGCGGATGCAGCGGAAGCCGTGGCCGACGTCCTTGCTCTCCGTCCACAGCACCGACTCGTCCTGGGCCTCAGGGTTGAACGGCACCAGCTTCACC
TGATGAAAAGATCAAAGATCCCGCCATGCCCATGAGAACACAACAATCTTCTGTCACCGCCATTTTCCCGC