Detailed information on CNT30341852


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 4e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020608Eragrostis tefCitrullus lanatus11.9437.4181.21165forward
CNT30653881Eragrostis tefRosa chinensis32.6342.2383.59451forward
CNT30477892Eragrostis tefArabidopsis halleri24.4631.5979.59338forward
CNT3050773Eragrostis tefCucumis sativus11.7228.8381.48162forward

Expression of CNT30341852

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MCDNEQMCMKDHLFGGRQFPAKPDQALFAICMTQLTAN*

>peptide 2 (34 aa)
MQETTQLRFYSQHLKDPNIPFFTSCLYNTTFIQQ*

>peptide 3 (30 aa)
MFLGKLLCFSVCIYWVSQRSKRLDSAGQKI*

>peptide 4 (29 aa)
MCQLIYSKTSSKIRLFRNELLPMGLTLPQ*

>peptide 5 (76 aa)
MGSTTSWRIISKLGLPKWCTTLSLRPVKRLSTTITLSPRSRRRSTRWLPTKPAPPVTSTRRPFRFRPSGTLPPTKCL

>peptide 6 (48 aa)
MQHLVLGCTYQLNNLSLIFCRALLIVLGALVGGCLVRHNWSNITLLLY*

>peptide 7 (41 aa)
MFLGMHLLGKPKEQKIGQRRPKDLAAFESLCLAHSTPKSDH*

Sequence

>CNT30341852
GTCAATGTTTCAGCAGTCCGCTTGCCCTCGTCGTAGCAGCTCCTGACACCTGTTAATCAGAAATCATAATAATTAGTGGAGCTTATTCAGAGCAGGTAAG
AACTTGCTCACTTTGTACAGAATCCAAGCAGTATGCAACACCTAGTACTGGGTTGTACCTATCAACTCAACAACCTTTCATTAATTTTCTGTCGTGCTCT
CTTGATTGTCTTAGGCGCCTTGGTTGGTGGATGTTTGGTTAGGCATAATTGGTCAAATATAACCCTCTTGCTTTATTAAAAAGGGATCACGAAAGTGGCC
CTCTTGGAGCAAATTCCACCTAACAACATCGTCCCTTTCCACCAAAAGGAATCAAAGCATGCAAGAGACTACCCAGCTAAGATTCTACAGCCAACATCTC
AAAGATCCCAATATCCCTTTTTTCACCAGTTGCTTATACAATACTACTTTCATACAACAGTAAGCTCCAAATTTGGAACATTACTATGTTTTTGGGAAAG
CTCCTATGTTTCTCGGTATGCATTTATTGGGTAAGCCAAAGGAGCAAAAGATTGGACAGCGCAGGCCAAAAGATCTAGCTGCCTTTGAGTCTCTTTGCTT
GGCTCATTCCACCCCAAAATCAGATCATTAAAGACTACTGATTGCTGTGTAACCAATTTGGGACAACCTCGAATCTACAGTCAGTACTCTATCAATATCG
TACAAATGTGTGACAACGAACAAATGTGCATGAAAGATCATTTGTTTGGTGGCCGACAATTTCCTGCTAAGCCAGATCAGGCTCTTTTTGCCATATGCAT
GACCCAACTAACAGCAAACTAAGCTCAACAGGCTACATCCAAATGACATGAGAAAACATGTGTCAACTAATTTACTCCAAGACTTCATCTAAGATAAGAT
TATTCAGAAATGAGTTATTACCGATGGGATTGACATTGCCCCAGTAAGTCTCCACCTGAGGGTGCTGGAGAGGATCACCATAGACCTCGCTGGTGCTGGT
GAGGAGGAACCTTGCGTTGATCCTCTTGGCCAATCCGAGCATGTTCAGTGTACCAACCACATTGGATATGATTGTCTTGACGGGGTTGTACTTGTAGTGG
ACGGGCGACGCCGGGCACGCGAGGTGGTAGATCTGGTCGACCTCGAGCAGGATGGGCTCGACGACGTCGTGGCGGATCATCTCGAAGTTGGGGTTGCCGA
AGTGGTGCACGACGTTGTCCTTGCGGCCGGTGAAGAGGTTGTCGACGACGATCACGCTGTCGCCGCGCTCCAGGAGGCGGTCGACGAGGTGGCTGCCGAC
GAAGCCGGCGCCCCCGGTGACCAGCACGCGGAGGCCCTTCCGCTTCAGGCCGAGCGGCACCTTGCCGCCGACGAAGTGCCTG