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Detailed information on CNT30341741

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 3e-100

BLAST vs NONCODE:
NONZMAT000139, E-value = 7e-74

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692288	Eragrostis tef	Oryza sativa	36.3	44.53	88.64	220	forward
CNT30672021	Eragrostis tef	Setaria viridis	36.96	33.48	90.62	224	forward
CNT30520655	Eragrostis tef	Setaria italica	36.3	88.71	91.36	220	forward
CNT30180108	Eragrostis tef	Secale cereale	32.34	89.5	89.8	196	forward
CNT30221546	Eragrostis tef	Hordeum vulgare	31.19	82.89	90.48	189	forward
CNT30392320	Eragrostis tef	Triticum turgidum	28.71	87	87.93	174	forward
CNT30450022	Eragrostis tef	Saccharum spontaneum	36.96	21.66	94.2	224	forward
CNT30721558	Eragrostis tef	Triticum spelta	31.02	83.93	88.3	188	forward
CNT30596661	Eragrostis tef	Oryza meridionalis	36.96	62.57	93.75	224	forward
CNT30104991	Eragrostis tef	Oryza longistaminata	33.83	86.5	95.61	205	forward
CNT30102585	Eragrostis tef	Oryza rufipogon	33.83	58.24	95.61	205	forward
CNT30575680	Eragrostis tef	Oryza barthii	36.3	88.35	88.64	220	forward
CNT30117229	Eragrostis tef	Oryza nivara	31.02	32.08	91.49	188	forward
CNT30556620	Eragrostis tef	Panicum hallii	36.63	22.56	87.39	222	forward

Expression of CNT30341741

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRMQRKPLPWSLLSVHSTDASSSSGLKWASFTGWD

>peptide 2 (37 aa)
MAGSSSSGCLPCTTPTARRWCRRGRRRGPCRRGRRRS*

Sequence

>CNT30341741
GTCATCTTCCGTTCAATACAAGTTACTTGCTTGCAGTTCTGATGAGAAATCGTTGACAAACTGAGGTACTAGGTGCTTACCGGGTGGCCCTGGCCAGTGG
AGTGCTTGAGTGCTTCGCCGGTGACCTTGTTGACGAGCGCGAAGGCCGGGTACCCTTCCTCGTCCCGGATCTTGGTGCTGTGCCTCATGTCCTTGACCCA
GTGCTGGTAGTCGTCCCTGGGGTTGGTGGGCGCCAGGCACGCGGTGCCGTTGCGCACGGTGAGGCTGAAGTCCTCGCCGGCCTTGCAGAAGACGCGCACG
GTGTGGACCGGCACGCCGGCGAAGGAGAAGTTCCCCGGCCCAGCAGCAGGGGAGTCGGCCTCGGGCCCCCATGGCAGGATCTTCCAGCTCTGGTTGTCTC
CCTTGCACCACTCCCACAGCACGACGGTGGTGCCGTCGTGGACGCCGCCGTGGTCCTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGCGGGTGTTGTTCAC
CATGCGGATGCAGCGGAAGCCCTTGCCGTGGTCCTTGCTCTCCGTCCACAGCACCGACGCGTCCTCCTCCTCCGGGTTGAAGTGGGCCAGCTTCACCGGG
TGGGAC