Detailed information on CNT30341737


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30251960Eragrostis tefAvena sativa30.432.0892.41145forward
CNT30681546Eragrostis tefTriticum urartu33.5473.0691.25160forward
CNT30148227Eragrostis tefBrachypodium distachyon18.0334.1397.6786forward

Expression of CNT30341737

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LRKRVRALKISDIGSIVIYCYTHTTATYTRP*

>peptide 2 (92 aa)
MSVTYAAVQQQYVHGCYIDMIRTSPWFCSVEGSISSVVGLDLPALVVTLAPCRQHDLGAVVDAAVGLVAVEGVEVEVDVVHHPDAAEAVADVA

>peptide 3 (60 aa)
MLHRHDTYISMVLFRRGLNLISSRAGSSSAGCHPRTMSPARPRCRRGRRRGPCRRGRRRS*

Sequence

>CNT30341737
TTACGTAAAAGAGTCAGGGCACTGAAGATATCAGATATTGGTAGTATTGTAATTTATTGTTATACACATACAACTGCGACATATACACGACCATGATTAA
TTAAGCAGCCCGTCTCCTACTTTATCGATGCAGTAGGCAGGACAAGGCTCAATTATTATCGTGTTATAAGATACACAGCGAAATCGATCGAGTAGCTTAT
GTCGGTCACATACGCTGCAGTCCAGCAGCAGTACGTACACGGATGCTACATAGACATGATACGTACATCTCCATGGTTTTGTTCCGTAGAGGGCTCAATC
TCATCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCACCCTCGCACCATGTCGCCAGCACGACCTCGGTGCCGTCGTGGACGCCGCCGTGGGCCTTG
TCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATCCTGATGCAGCGGAAGCCGTGGCCGACGTCGCG