Detailed information on CNT3034142


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 5e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515780Theobroma cacaoJuglans regia31.917.488.1126forward
CNT30526413Theobroma cacaoPhaseolus vulgaris21.2710.8788.184forward
CNT3048365Theobroma cacaoPrunus dulcis27.859.188.18110forward
CNT30152283Theobroma cacaoPrunus persica27.347.0683.33108forward

Expression of CNT3034142

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MAHYRFVTSHLVHSSCYCVLLFGGLFLHLRRDCVSIF

>peptide 2 (31 aa)
IYVTVLLYRQCTLQAFTWGSKLCDPEEGNGR*

>peptide 3 (74 aa)
MLMYLCGRLLLLWLLSRQHPPNEPCKPLLFLICGNRRQHMHNSAYGTLQICHLPSCALQLLLCTSVRGFVFAPP*

>peptide 4 (39 aa)
MVPGSTLRTWKAKCFGFHADVSVWQIATALAFVPSAPSK*

Sequence

>CNT3034142
AATTTATGTGACGGTGCTGCTTTACCGTCAGTGTACTCTTCAGGCTTTTACTTGGGGATCCAAACTATGTGATCCTGAGGAAGGAAATGGCAGATAGGAA
TGGTTCCTGGCTCAACTTTAAGGACTTGGAAAGCCAAATGCTTTGGGTTCCATGCTGATGTATCTGTGTGGCAGATTGCTACTGCTTTGGCTTTTGTCCC
GTCAGCACCCTCCAAATGAACCATGTAAGCCCTTGTTGTTTCTGATTTGTGGCAATAGAAGACAGCATATGCATAATTCTGCTTATGGCACACTACAGAT
TTGTCACCTCCCATCTTGTGCACTCCAGCTGCTATTGTGTACTTCTGTTCGGGGGTTTGTTTTTGCACCTCCGTAGAGATTGCGTAAGCATTTTT