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Detailed information on CNT30341164


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678375Eragrostis tefSetaria viridis12.7928.2791.51106forward

Expression of CNT30341164

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDRITNGSTTPCLEKKSVRMRNLFGRATAELDMPRMRNRLWEEHETQSRSMRIL*

>peptide 2 (28 aa)
MGPALAVFELARRDRPGLIIRWVLDVRRP

>peptide 3 (66 aa)
MPGKEICKNEKLIRSCNSRARHAKNEKSTLGRTRDTEQKHAHSVAPILSLISWGIGSLLGSTCRTC*

Sequence

>CNT30341164
TAAATTAAATGAACAATCATTTTGATAATACAACACGTTACATTTTACAGTGAATGGACAGAATTACAAATGGTAGTACAACTCCATGCCTGGAAAAGAA
ATCTGTAAGAATGAGAAACTTATTCGGTCGTGCAACAGCCGAGCTAGACATGCCAAGAATGAGAAATCGACTTTGGGAAGAACACGAGACACAGAGCAGA
AGCATGCGCATTCTGTAGCTCCGATCCTCAGCTTAATTAGTTGGGGCATTGGAAGTCTTTTGGGCAGTACTTGCCGCACTTGTTGAGGACGAGGTTGAGG
CTGACGGGCACGTTGAGGCGGAGGCCGAGCACGTTGGCCTTGATGGCGGTGCAGAGACAGACGGCGGCGTCGAGGTCCACGAGCCCGTCCAGCAGCGAGC
AGCACGGCTCGTAGCGCGGCAGGCCCACCTTGACGAGGCCCAGCACGTTGGCGCACACGTTCAGCTTCAGCGCGTCGCGGGGGCACTTGCCGTGGCCTCC
GGGCGTCGGCGTCGGCGGCTTGGGCGCCGGCGGCGGCGGGCAGTTGGTGGCGCTCGCCACGGCGGCGAGGACAAGGGTCACGGCAAGGAGGAGCGCGGCT
CTCGCTGCCATATTGCGAATTAATCGAGCAGTACTGCACAGTGGTCTCTGTGTCTGCTTGATCGTGCTTGTATAAGTGCTGCTGGCTGTGGGCAGTGTGT
GCACGCTGGAGTGGTATATAAAGCGGCCGTGGCGACGCAAGATGGGGCCTGCGCTTGCGGTGTTCGAGCTGGCGCGGCGGGATCGTCCCGGTCTAATAAT
ACGTTGGGTTTTGGACGTGCGTCGACCCG