Detailed information on CNT30341070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FEQ8|PER2_MAIZE, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT301235Eragrostis tefZea mays30.426.5783.7580forward
CNT30595986Eragrostis tefOryza meridionalis98.8627.1779.23260forward
CNT30116322Eragrostis tefOryza nivara23.195.191.861forward

Expression of CNT30341070

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SSGSGRPCGRPRAPPSRRRRALSRRSCRSAG*

>peptide 2 (69 aa)
EQWERPTVWAPESTTISSTSSPFAAKLPISWLRLKKGGGRLLSASEELETRPSRRPAGMSILSVSLVRK*

>peptide 3 (86 aa)
GAVGAADRVGAREHHHLVDVEPFRGEAADQLVEVEEGRRQVVERLGGAGDAPVEAAGRHVDLEREPGEEVGGVAGGEGDDVGARDHA

Sequence

>CNT30341070
GGAGCAGTGGGAGCGGCCGACCGTGTGGGCGCCCGAGAGCACCACCATCTCGTCGACGTCGAGCCCTTTCGCGGCGAAGCTGCCGATCAGCTGGTTGAGG
TTGAAGAAGGGCGGCGGCAGGTTGTTGAGCGCCTCGGAGGAGCTGGAGACGCGCCCGTCGAGGCGGCCGGCCGGCATGTCGATCTTGAGCGTGAGCCTGG
TGAGGAAGTAGGCGGCGTCGCGGGCGGCGAAGGCGACGATGTCGGCGCACGAGACCACGCCGG