Detailed information on CNT3034106


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAF8|TBB3_GOSHI, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380834Theobroma cacaoManihot esculenta84.3140.3884.3172forward
CNT30204946Theobroma cacaoHelianthus annuus20.110.9392.6841forward
CNT30364150Theobroma cacaoSorghum bicolor84.3145.0379.65172forward
CNT30426941Theobroma cacaoPapaver somniferum28.9210.2488.1459forward
CNT3022287Theobroma cacaoPopulus trichocarpa84.842.0986.13173forward

Expression of CNT3034106

Peptides detected in this lncRNA

>peptide 1 (67 aa)
LSPIIPSSRFVMPLSPIIPSSRLSKHEVIGPKDLSVRSSPHTIHSPRLEIHKHGAWDKPSTRSLIVVN

Sequence

>CNT3034106
CTTAGCCCAATTATTCCCAGCTCCAGATTTGTAATGCCCCTTAGCCCAATTATTCCCAGCTCCAGATTGTCCAAACACGAAGTTATCGGGCCTAAAGATC
TGTCCGTAAGGTCCAGTCCTCACACTATCCATAGTCCCCGGCTCGAGATCCATAAGCACGGCGCGTGGGACAAACCTTCCACACGAAGCCTCATTGTAGT
AAAC