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Detailed information on CNT30340854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 7e-30

BLAST vs NONCODE:
NONZMAT000139, E-value = 5e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Eragrostis tefSetaria viridis61.8427.3397.16141forward
CNT30289434Eragrostis tefTriticum aestivum61.8424.3594.33141forward
CNT30221016Eragrostis tefHordeum vulgare54.3921.6495.16124forward
CNT30386449Eragrostis tefTriticum turgidum52.6324.2995120forward
CNT30436341Eragrostis tefAegilops tauschii61.8446.3894.33141forward
CNT30251924Eragrostis tefAvena sativa61.8425.9295.74141forward
CNT30680542Eragrostis tefTriticum urartu61.8438.1195.04141forward
CNT30362957Eragrostis tefSorghum bicolor53.9515.5195.93123forward
CNT30596591Eragrostis tefOryza meridionalis62.2830.1594.37142forward
CNT30102554Eragrostis tefOryza rufipogon61.8436.3495.74141forward
CNT30496422Eragrostis tefDigitaria exilis62.2823.0196.48142forward
CNT30117165Eragrostis tefOryza nivara61.8431.4795.04141forward
CNT30604388Eragrostis tefOryza punctata62.2842.7794.37142forward
CNT30556699Eragrostis tefPanicum hallii62.2823.7997.18142forward
CNT30551356Eragrostis tefOryza brachyantha60.9640.1794.96139forward

Expression of CNT30340854

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAGSSSAGCRPRTTSRARSRCRRARRRATCRRGGRRS*

>peptide 2 (75 aa)
QAGQGWFILISSMAGSSGVGQFVAEGSFSSVVWLDLPALVVALAPLPEHDLGAVAHAAVPLVAVEGVEVEVDVVDH

Sequence

>CNT30340854
CAAGCAGGACAAGGCTGGTTTATTCTCATCAGTAGTATGGCTGGATCTTCAGGAGTAGGACAATTTGTTGCAGAGGGTTCATTCTCATCAGTAGTATGGC
TGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATCTCGGTGCCGTCGCGCACGCCGCCGTGCCACTTGTCGCCGTGGAGGGCGT
CGAAGTTGAGGTAGATGTTGTTGACCAT