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Detailed information on CNT30340273


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225628Eragrostis tefHordeum vulgare15.3869.1593.53139reverse complement
CNT30604314Eragrostis tefOryza punctata11.3938.1598.06103reverse complement

Expression of CNT30340273

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLRNATKNTLTDLGGHLPDIVGTAGINIMRKEPSFVWTLLKHMYFLLLSILCNY*

>peptide 2 (37 aa)
MVTSGQNSVSPRRSTPVTTCYQVLHLDFTWIKVRFHP*

>peptide 3 (52 aa)
MEILDVEKCNQKHTHRFGGPLTRHCWDSRNKYHEEGAIICMDTIETHVLLAS*

>peptide 4 (36 aa)
MSTLISITHVSRRGIIENDFSFDSCTKVFLVFSIVI*

Sequence

>CNT30340273
AATCACTATGACTTAAACAGTGCTGCACCTGCACATGGAGTCCTATATGACAAATAGTATCAACAAATATTGATATCTGAACCCACAAGAGGAGGTTTCT
ATTTACATGGTGACTTCCGGTCAAAACAGCGTGTCACCAAGGAGAAGCACTCCAGTAACCACTTGTTATCAGGTTCTTCATCTTGATTTCACTTGGATCA
AAGTAAGATTTCATCCTTGACATCGTCCATGGATTTCGGAGCCGACTATTTCGTTGGCCCTCCAACTGAAATACTGAATTCAGCCTAACAAATGTATTGC
GATTGCAATTGTCAAACAAATGGAGATACTTGATGTTGAGAAATGCAACCAAAAACACACTCACAGATTTGGGGGGCCACTTACCAGACATTGTTGGGAC
AGCAGGAATAAATATCATGAGGAAGGAGCCATCATTTGTATGGACACTATTGAAACACATGTACTTCTTGCTTCTTAGTATCCTTTGTAACTATTGAGTC
TACTATAAATTTCCAACTCCTTGCTTCTTAGTACCCTTTGTTACTATTGAGTCTACTATAAATTTCCATTGAGCAAAAATTCGTCAGCAACACACCAAGA
AAGTCGAATTTGTCTGCATCATATTACAATTTTTGGAAATCCTTTTGAAGGAAGCTATTCAGGAACAGCTTGAACGTTTTTCCCTTCAGGAACAAACATA
AATATAGCATGTCTACTCTTATTAGTATAACTCATGTTAGTAGAAGAGGAATCATTGAGAATGATTTTTCATTTGATTCATGCACAAAAGTTTTCTTAGT
TTTTAGTATAGTTATTTAAAGAATAGATAGAAAAAAGATTGCGTCCAATAGGATTTGAACCTATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAG
ACAA