Detailed information on CNT30339867


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHI4|RLP3_ARATH, E-value = 7e-147

BLAST vs NONCODE:
NONORUT002676, E-value = 4e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30227115Eragrostis tefHordeum vulgare2.522.587.363reverse complement
CNT30552862Eragrostis tefOryza glaberrima7.8961.878.89199forward
CNT30441953Eragrostis tefAegilops tauschii2.5420.4592.1964forward
CNT30459211Eragrostis tefSaccharum spontaneum8.8851.2679.91224forward
CNT30722320Eragrostis tefTriticum spelta4.6830.1881.36118forward

Expression of CNT30339867

Peptides detected in this lncRNA

>peptide 1 (32 aa)
METERRATKLWITTITRMVKCIKLASTWNWPF*

>peptide 2 (36 aa)
DRSNAPGPGGRGWTRRAARAPAESWRSLGQQLNCLT*

>peptide 3 (31 aa)
TAAMRRDPAAAVGLGGRRARRRKVGEAWGSS*

>peptide 4 (67 aa)
MFSTCRGRTVDDGNSCNSPLIWLKLTSRTTMLLEDTSSIGRPPDSMLWERLRRSRPVRLAREAEMCP*

>peptide 5 (72 aa)
PQQCAGTRRPRLDSEGGARAGGKLAKLGAAVKLSDMNGAGANTIQVASCLLSLLSHIIIDLISVLTKSMPGS*

>peptide 6 (38 aa)
MPMFPSFRETYLHLTGISTECCACCLLTWDSITSHDVH*

>peptide 7 (43 aa)
MLNPMANITSPIHGSTEIIHAETSSAESQWRLSVGPQSFGLPP*

>peptide 8 (98 aa)
MLLQSKWSSSNLLSSPMESCILPLRLFPPRSRVTRFVSLLMLPSDPASWLLGKERCSSKLRLNNSSGRVPQRLLCPASRDVSMEQLPSAGGMLPLNWL*

>peptide 9 (77 aa)
MHPNKLCIFNTKDMLCTKFQSTQFLRLCQCFQASVKLIFISLGSLLNVVLAAYSPGIRSLLMMYINSADLYIISKQS*

Sequence

>CNT30339867
GACCGCAGCAATGCGCCGGGACCCGGCGGCCGCGGTTGGACTCGGAGGGCGGCGCGCGCGCCGGCGGAAAGTTGGCGAAGCTTGGGGCAGCAGTTAAACT
GTCTGACATGAACGGGGCTGGCGCAAATACCATACAGGTTGCAAGTTGTTTACTTAGTCTGCTGTCACACATCATTATTGATTTAATCAGTGTCCTCACT
AAAAGCATGCCTGGTTCTTGAACTTCTGTATCTGAATATCCTTTTCCTAGTGCGTTTAAAACATTCAATAAACACGATTTGCAATGCATCCAAACAAGCT
CTGCATATTCAATACAAAAGATATGCTTTGCACAAAATTTCAGAGTACACAATTTCTACGGCTATGCCAATGTTTCCAAGCTTCCGTGAAACTTATCTTC
ATCTCACTGGGATCTCTACTGAATGTTGTGCTTGCTGCCTACTCACCTGGGATTCGATCACTTCTCATGATGTACATTAATTCGGCTGACCTATATATTA
TCTCCAAGCAATCTTGAGCCTAGACAATACCATCTGATCTAATAGAACTCCAACTCCGAAGAATATGCTGAATCCAATGGCAAACATTACCTCGCCGATC
CATGGCTCTACGGAGATTATACATGCAGAAACTTCTTCTGCTGAGTCACAATGGAGACTGAGCGTAGGGCCACAAAGCTTTGGATTACCACCATAACTAG
AATGGTCAAATGTATCAAACTGGCCTCCACTTGGAATTGGCCCTTCTAGGTCATTGTTCGAAACATTGAATGAAGAAAGAAAGTGCAGGTAGTGTAGGGA
GCCTGGAATTGCACCTATGAGATGGTTGTTTGACAGGTCTAGCGCCTGCAGGCTTGTAAGATTGGATACTGATTGTGGAATCTCTCCATATAATCCATTG
TAGCTCAAATTGAGCACGCCTAATGCTTTCAACTCACCGATCTCTGGCGGTATTGAGCCATTGAGGTTGTTCATACCGAGTTTCAGCGCTTTAGGGAAAG
CAGTGGTCATGCGGTATTGAAGTGATAGAGTTCTATAAACAGGCAGCACAAAGACCTTTGGCGCAACCTTGTCTGTTTTCAGCATTGGCATCCTCATTAA
GGCTGTTGGAATTTGCCCTGTAAGACTATTATTTGATATGTCTATATAGAAGAGAAAGTTTAGACTACTCATCCAATCAGGTATTTGTCCAGTTAGTTGA
TTGTTGTATAAAAACAAAACCTCCAAATTTGCAAGCTTTGATAACCAAGGTGGGATATTTCCATGCAATGAACAGCCACTTACAGAAAAAACCTGAAGAT
TCTCAAATCCATCAATTCTATCATCTTGTGGTATGGATTCATGCATGAAGTTCTTCCCAATTAACAAGGTGGTCAGGTTCCTACAACTCCTAAGAATCTG
AAGTGCACTCGTGATATTTGTAAGGGAGTTGTTAACAAGTGATAGGAACGTGAGTGAATTCAGACTGCAAATTCTTTCTGACAGCTGGCCATGGAACTTG
TTCGTAGATAACCGCAGCGCTATTAGATTGCTGCATGAATATATACTTTCTGGAATTGTCCCACTGAAATTGTTCCGCAAAAGATCTAAGACTTTTAGAT
TTGGTAAGTTGGAGAAATTGACATTGGTGAGCGCACCACTGAAACTGTTGTTCTTGAGGTCGATGATTATGAGATTTGTGCAATTACTTAGAGTCGATGG
AAGTTGACCAGACATGTTATTACAATCCAAATGGAGTTCCTCTAATCTCTTGAGCTCGCCTATGGAGTCTTGTATACTTCCACTGAGACTGTTCCCTCCA
AGATCAAGGGTGACCAGATTTGTGAGCTTGCTTATGCTGCCAAGTGATCCTGCTAGCTGGTTATTAGGAAAAGAGAGGTGCTCCAGCAAGTTAAGATTGA
ATAATTCCTCAGGAAGAGTCCCGCAGAGGTTGTTGTGCCCAGCATCGAGAGATGTGAGCATGGAGCAGCTACCGAGTGCTGGAGGGATGTTACCACTAAA
TTGGTTGTAACTGAGATGAAGCACGGCAAAGGATGGCGCGCTGAGGCATAAGATAGCTGGTATCTGGCCAATAAAGCTATTGTTGCTGGCATTGAGTGCA
ACAAGGCTGTTCATAACCGCCCATGTGGTGGATGGAAACGGTCCTGTGAACAAGTTGCTCGAGATGTTCAGTACCTGCAGAGGTCGAACGGTTGACGATG
GCAACTCCTGCAATTCACCACTGATCTGGTTGAAGCTAACGTCGAGGACAACAATGCTGCTGGAGGACACCAGTTCCATCGGCAGGCCACCAGACAGCAT
GTTGTGGGAGAGGTTGAGGCGGAGCAGGCCGGTGAGGTTGGCAAGGGAAGCTGAAATGTGCCCCTGAAGGCTCATTGAAGAAAGGAAGACATCAGTCACA
GTCCGATCTGAACTGCACCCGATCCCTTCCCATTTGCAACAGTCTGTTTCATTCAGCCATGAACCGGTGAGGCCATTGTCATGGGAGAGCTCAGCAGCAA
ACTGGAGCAAGGATGTCTTCTCC