Detailed information on CNT30339734


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578174Eragrostis tefOryza barthii24.352.1989.3966forward
CNT30117930Eragrostis tefOryza nivara24.353.5389.3966forward

Expression of CNT30339734

Peptides detected in this lncRNA

>peptide 1 (83 aa)
SISAFSTPTPPSPSSLHQSTHGDRGGGEQEGRRPGPQGARGRARQRGQHLRREGRRCPLVRAEGEAGAVQEQQGQGGCSCGCG*

>peptide 2 (89 aa)
PPSPPSRHPRLRHPPHSTNPPMATVAAGSKRGGGRGRKALVAVLDNEANISAGKADAVHSSAQKAKRAPSRSSKAKAAAAAAAAEASPAA

>peptide 3 (89 aa)
LHLRLLDTHASVTLLTPPIHPWRPWRRGARGAAAGAARRSWPCSTTRPTSPPGRPTLSTRPRRRRSGRRPGAARPRRLQLRLRLRRPPRR

Sequence

>CNT30339734
CCTCCATCTCCGCCTTCTCGACACCCACGCCTCCGTCACCCTCCTCACTCCACCAATCCACCCATGGCGACCGTGGCGGCGGGGAGCAAGAGGGGCGGCG
GCCGGGGCCGCAAGGCGCTCGTGGCCGTGCTCGACAACGAGGCCAACATCTCCGCCGGGAAGGCCGACGCTGTCCACTCGTCCGCGCAGAAGGCGAAGCG
GGCGCCGTCCAGGAGCAGCAAGGCCAAGGCGGCTGCAGCTGCGGCTGCGGCTGAGGCGTCCCCCGCGGCGG