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Detailed information on CNT30339698


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 9e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Eragrostis tefEucalyptus grandis27.9497.1884.64345forward
CNT30316147Eragrostis tefCorylus avellana36.1159.8781.17446forward
CNT30703138Eragrostis tefQuercus lobata20.0847.3384.27248forward
CNT30499549Eragrostis tefCoffea canephora12.0630.4183.89149forward
CNT30268105Eragrostis tefChenopodium quinoa13.620.0280.95168forward
CNT3068683Eragrostis tefQuercus suber23.1658.1383.57286forward
CNT30289293Eragrostis tefTriticum aestivum17.4170.7286.05215forward
CNT3084565Eragrostis tefVigna radiata27.6920.2479.82342forward
CNT30539234Eragrostis tefBrassica napus23.0831.1583.51285forward
CNT30261302Eragrostis tefBrassica rapa22.5153.7783.09278forward
CNT30454417Eragrostis tefSaccharum spontaneum32.5551.3487.31402forward
CNT30131528Eragrostis tefLolium perenne26.6471.3792.71329forward
CNT30718631Eragrostis tefMalus domestica golden23.245084.32287forward
CNT30363710Eragrostis tefSorghum bicolor16.9235.687.56209forward
CNT30570592Eragrostis tefVitis vinifera19.4374.383.33240forward
CNT3055709Eragrostis tefAmborella trichopoda13.7725.9981.76170forward
CNT30105598Eragrostis tefOryza longistaminata33.4459.9489.59413forward
CNT30102778Eragrostis tefOryza rufipogon10.1249.4184125forward
CNT30574680Eragrostis tefOryza barthii30.8541.5990.29381forward
CNT30580197Eragrostis tefEchinochloa crusgalli31.8247.6988.55393forward
CNT30115589Eragrostis tefOryza nivara30.8526.790.29381forward
CNT30603506Eragrostis tefOryza punctata31.577.4989.72389forward
CNT30174824Eragrostis tefVigna angularis31.9841.5880395forward
CNT30550386Eragrostis tefOryza brachyantha21.9498.5588.56271forward
CNT30337932Eragrostis tefCynara cardunculus20.430.7382.14252forward
CNT3064271Eragrostis tefSelaginella moellendorffii19.6844.1881.48243forward

Expression of CNT30339698

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MGSTTSWRIISKLGLPKWCTTLSLRPVKRLSTTITLSPRSRRRSTRWLPTKPAPPVTSTRRPFRFRPSGTLPPTKCL

>peptide 2 (34 aa)
MRKHVSTNVIYSQTSSKIRVFRDELLPMGLTLPQ*

>peptide 3 (33 aa)
AHFVQNPSSMQHLVLGCTYQAQQTFINFSVVLS*

>peptide 4 (56 aa)
MQETTQLRFHSQHLKDPKIPFSPVAYTILLSYNSKLQIWNITMFLGKLFFWVCQKI*

>peptide 5 (78 aa)
MPKDLDCLWFSFLGSFHPKIRSLKTTDCCVTNSGQPRIYGQQSYSINIIQPNKCACKIIFLVADSFQLSRIRLFLPYA*

Sequence

>CNT30339698
TAGCCCACTTTGTACAGAATCCAAGCAGTATGCAACACCTAGTACTGGGTTGTACCTATCAAGCTCAACAAACTTTCATTAATTTTTCTGTCGTGCTCTC
TTGATTGTCTTAGGCGCCTTGGTTGGTGGATGTTTGGTTAGGCATAATTGGTCAAATATAACCCTCTTGCTTTATTGAAAAGGGATCAACAAAGTGGCCC
TCTTGCAGCAAAATTCCACCTAACAACATCGTCCCTTTCCACCAAAAGGAATCAAAGCATGCAAGAGACTACCCAGCTAAGATTCCACAGCCAGCATCTC
AAAGATCCCAAGATCCCTTTTTCACCAGTTGCTTATACAATACTACTTTCATACAACAGTAAGCTCCAAATTTGGAACATTACTATGTTTCTGGGAAAGT
TATTTTTCTGGGTATGCCAAAAGATCTAGACTGCCTTTGGTTCTCTTTTCTTGGCTCATTCCACCCCAAAATCAGATCATTAAAGACAACTGATTGCTGT
GTAACCAATTCGGGACAACCTCGAATCTACGGTCAGCAATCCTACTCTATCAATATCATACAACCGAACAAATGTGCATGTAAGATCATTTTTTTGGTGG
CCGACAGTTTCCAGCTTAGTCGGATCAGGCTATTTTTGCCATATGCATGACCCAACTAACAGCAAACTAAGCTCAACAGGGTACATCCAAATAACATGAG
AAAACATGTGTCAACTAACGTAATTTACTCCCAGACTTCATCTAAGATAAGAGTATTCAGAGATGAGTTATTACCAATGGGATTGACATTGCCCCAGTAA
GTCTCCACCTGAGGGTGCTGGAGAGGATCACCATAGACCTCGCTGGTGCTGGTGAGGAGGAACCTTGCGTTGATCCTCTTGGCCAATCCGAGCATGTTCA
GTGTCCCAACCACATTGGATATGATTGTCTTGACGGGGTTGTACTTGTAGTGGACGGGGGACGCCGGGCACGCGAGGTGGTAGATCTGGTCGACCTCGAG
CAGGATGGGCTCGACGACGTCGTGGCGGATCATCTCGAAGTTGGGGTTGCCGAAGTGGTGCACGACGTTGTCCTTGCGGCCGGTGAAGAGGTTGTCGACG
ACGATCACGCTGTCGCCGCGCTCCAGGAGGCGGTCGACGAGGTGGCTGCCGACGAAGCCGGCGCCCCCGGTGACCAGCACGCGGAGGCCCTTCCGCTTCA
GGCCGAGCGGCACCTTGCCGCCGACGAAGTGCCTG