Detailed information on CNT30339348


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84TH6|DIR23_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690292Eragrostis tefOryza sativa12.713382.21163forward
CNT3099839Eragrostis tefOryza rufipogon11.737.0482150forward

Expression of CNT30339348

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MASLGLELRGRTEASTSEAPSCTSPFFPASSPATNGGNPARTRSRRCHPRSGSPTAWCCRCPRVRTRSPGGRGGRR*

>peptide 2 (82 aa)
HHSKKHMLIYFFLAEKKANVNMITKYRYRSPTSVCGATGIDPVEIAAVWTHGARTCETPSPISPSYSPWRLSVLVEQEPGIS*

>peptide 3 (36 aa)
MRELKLKLVQKTGQQAEKQALSGTRNHGDRSTELRL*

>peptide 4 (41 aa)
MVHAHARLPHPSHLATAHGDYLYSSSRNQESLNPLLYSFTF*

>peptide 5 (35 aa)
METICTRRAGTRNLLTPSCTLLPFDWICKVLYQHS*

>peptide 6 (35 aa)
MLCSPSRLVVMEVPSATPATREPVSACTVRLSRKT*

>peptide 7 (33 aa)
MVSCWYSVKLRVFPRPPSVFMSDVVAATCGSSN*

Sequence

>CNT30339348
CACCATAGTAAAAAGCACATGTTGATATATTTTTTTTTGGCGGAAAAGAAAGCAAATGTTAATATGATCACTAAATACAGGTATAGATCGCCGACCTCAG
TTTGTGGCGCCACAGGTATAGATCCCGTGGAGATCGCGGCCGTCTGGACGCATGGTGCACGCACATGCGAGACTCCCTCACCCATCTCACCTAGCTACAG
CCCATGGAGACTATCTGTACTCGTCGAGCAGGAACCAGGAATCTCTTAACCCCCTCCTGTACTCTTTTACCTTTTGATTGGATTTGTAAAGTGTTGTACC
AGCACTCGTAACGAACTCATTTGCCAATTCGTGCTTTCGAATGAAAAGTAGGTGAGGAATCTCTCCTAACCCCTTCCCCCAATCGCTCGAAAGAAAAATG
ATCACAAGTAAACATTTCCTTAGAAACAGTAAATAATGACTTCATAAAGTCAAATTTCTTTTTGAATACTCCGAGAACAAAAGGAGAAGTGCCCAATTAT
TATCCAACCTAACTATACTGACTCAAAATGGCGGCATGTATGTAATACTCCAGCACTAATGCGTCTGGACTGACCGAACCTGCCAGAAGCACTATGGCTT
CTCTGGGACTGGAGCTTCGTGGGCGTACGGAGGCCAGTACAAGTGAAGCTCCATCTTGTACGTCACCGTTCTTCCCAGCAAGTTCACCGGCGACGAACGG
AGGTAACCCAGCGCGTACGCGAAGTCGCCGGTGCCACCCACGATCGGGTAGTCCGACGGCTTGGTGTTGTAGGTGCCCCCGAGTACGGACACGGAGCCCC
GGTGGCCGCGGTGGTCGACGGTGATCTTGGCCAGCGACATGCTCTGCAGCCCGTCGAGGCTCGTCGTGATGGAGGTGCCCTCCGCGACGCCGGCCACCCG
GGAGCCCGTGTCGGCGTGCACCGTCAGGTTGTCGCGGAAGACGTAGACGGTGCCGAACGGCGTGGTGGTCTGGCTGACGCCCGCGCCGGCCACGCCGTCG
ACGACGATGTAGCCGGTCTTGTTGATGGTCTCCTGCTGGTACAGCGTGAAGTTGAGGGTCTTCCCGCGACCGCCTTCGGTTTTCATGAGCGATGTTGTTG
CGGCTACATGCGGGAGCTCAAACTGAAGCTGGTGCAGAAAACAGGTCAACAGGCAGAAAAGCAAGCTCTTAGCGGAACTCGAAACCATGGCGATCGATCG
ACCGAATTGAGACTGTAGCTAGTCACACAAATATGTGTTGTATCGAATTTCTTGGTGTGCCTTGGTCTATACAGCCTTTTTT