Detailed information on CNT30339268


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Eragrostis tefOryza sativa61.0955.5987.15179reverse complement
CNT30727469Eragrostis tefCorchorus capsularis30.3829.2888.7689forward
CNT30185797Eragrostis tefSecale cereale24.5729.6395.8372forward
CNT30294691Eragrostis tefTriticum aestivum24.5723.6897.2272forward
CNT30227081Eragrostis tefHordeum vulgare24.5724.3297.2272forward
CNT30391653Eragrostis tefTriticum turgidum24.5723.8497.2272forward
CNT30561830Eragrostis tefActinidia chinensis28.3327.2189.1683reverse complement
CNT30552322Eragrostis tefOryza glaberrima51.8848.7287.5152forward
CNT30443279Eragrostis tefAegilops tauschii24.5723.6895.8372forward
CNT30662530Eragrostis tefTriticum dicoccoides24.5721.1897.2272forward
CNT30130300Eragrostis tefLolium perenne95.5696.8984.29280reverse complement
CNT3067608Eragrostis tefLeersia perrieri30.7229.2294.4490forward
CNT30689289Eragrostis tefTriticum urartu24.5717.6595.8372forward
CNT30596339Eragrostis tefOryza meridionalis33.4524.591.8498reverse complement
CNT30369610Eragrostis tefOryza glumipatula35.1525.1290.29103reverse complement
CNT30644548Eragrostis tefCannabis sativa28.6726.0989.2984forward
CNT30108933Eragrostis tefOryza longistaminata51.8849.0387.5152forward
CNT30103689Eragrostis tefOryza rufipogon97.9573.5983.62287forward
CNT30574593Eragrostis tefOryza barthii51.8848.7287.5152forward
CNT30117631Eragrostis tefOryza nivara97.6188.5484.27286forward
CNT30603809Eragrostis tefOryza punctata51.8849.5185.53152forward
CNT30550736Eragrostis tefOryza brachyantha28.3326.9591.5783forward

Expression of CNT30339268

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MREAGFTEQRLPPASNGGRITGRCTAGPLRPRRPLWQTTI

>peptide 2 (37 aa)
QRQLVTRAGALRWCGCHVWRLGLGLWLHSAARPFQVA*

>peptide 3 (59 aa)
AAPACNPSGGIKVVRMPCVALGPGSVAALCGPPVPSCVVGCGRFGEGLGVSAPRVAGNA*

>peptide 4 (36 aa)
MCGAWAWVCGCTLRPARSKLRSGLRTLWRRPWRLST*

Sequence

>CNT30339268
AGCAGCGCCAGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGCGGATGCCATGTGTGGCGCTTGGGCCTGGGTCTGTGGCTGCACTCTGCGGCCCGCCC
GTTCCAAGTTGCGTAGTGGGCTGCGGACGCTTTGGCGAAGGCCTTGGCGTCTCAGCACCTAGAGTGGCGGGCAATGCGTGAGGCTGGCTTCACAGAGCAG
CGATTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACCGCAGGCCCGCTTAGGCCCAGGCGCCCTCTTTGGCAGACCACCATC