Detailed information on CNT30339207


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672592Eragrostis tefSetaria viridis30.6622.7387.6965forward
CNT30552278Eragrostis tefOryza glaberrima30.667.3789.2365forward
CNT30595500Eragrostis tefOryza meridionalis30.6610.1990.7765forward

Expression of CNT30339207

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MRAMDTPRVFTPGKVSTLAAVTRAPLGLLVLPGFLSPAKKKSSAVTFALQGNPLILMA

>peptide 2 (46 aa)
CAAGSGRRGRSRCAPWTRRGCSRRGRCPHWPPSPGRRWGCWCCRGS*

>peptide 3 (69 aa)
VRRVLAAGGVVDARHGHAEGVHAGEGVHIGRRHQGAVGVVGVAGVLEPREEEVVRRHVRLAGEPVNLDGC

Sequence

>CNT30339207
GTGTGCGGCGGGTTCTGGCCGCCGGGGGCGTAGTCGATGCGCGCCATGGACACGCCGAGGGTGTTCACGCCGGGGAAGGTGTCCACATTGGCCGCCGTCA
CCAGGGCGCCGTTGGGGTTGTTGGTGTTGCCGGGGTTCTTGAGCCCCGCGAAGAAGAAGTCGTCCGCCGTCACGTTCGCCTTGCAGGGGAACCCGTTAAT
CTTGATGGCTGC