Detailed information on CNT30339116


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690617Eragrostis tefOryza sativa23.8414.1588.24170forward
CNT30522968Eragrostis tefSetaria italica25.5313.5489.56182forward
CNT30293057Eragrostis tefTriticum aestivum25.8121.8884.78184forward
CNT30455685Eragrostis tefSaccharum spontaneum25.1112.2989.94179forward
CNT30364121Eragrostis tefSorghum bicolor25.1127.288.83179forward
CNT3099938Eragrostis tefOryza rufipogon23.8416.0488.24170forward
CNT30580297Eragrostis tefEchinochloa crusgalli26.9314.0988.54192forward

Expression of CNT30339116

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSPSRRPPTAPPSSPAPSPIPNLFFFGGLTACCWYPYPPCGYPYPACGGGG

>peptide 2 (57 aa)
MAGKPRRLHRPWLPAGRRWEAGTRRLCLPVGRRKEADTRWPCLRAPSKPPPSSNPAS*

>peptide 3 (38 aa)
MEVTKTPHPSVNHSKNCNSYTISFSGIYITTSDTMHNS*

Sequence

>CNT30339116
CTCCAGCACAACGTGTGAACCAAAGATTGAATTAATCAATAAACACAAAGCAGCATCCACAGATCAAACGATTCATCAATGGAAGTGACAAAAACTCCAC
ACCCCAGTGTGAACCATAGCAAAAACTGTAACTCATATACTATCTCATTCAGTGGTATTTACATCACAACATCAGATACGATGCATAATTCATAAGTTGA
TCTTGATCCTCAAAAGTAGGTACGAACGAAAACATTTCACAAAGGCAAGACTAAAATGAAAATCTCATCAGAACGCTCTAGAAATCGAAGGCCGGAAGAA
GGCGGGTAAGCAGTCGCCGGCTCGTTAGGCTTTGACGCGGGCGGGTAGGCGGTGGATGGCGGGTAAGCCCCGGCGGCTGCATCGGCCTTGGCTGCCGGCG
GGTAGGCGGTGGGAGGCGGGTACGCGTCGGCTTTGCCTGCCGGTGGGTAGGCGGAAGGAGGCGGATACGCGTTGGCCTTGCCTGCGGGCCCCGTCGAAGC
CCCCGCCATCGTCGAACCCGGCGTCGTAGCCGGCGTCATACGCCGACGCATCCGAGATCATGTCGCCGAGCAGGAGGCCTCCGACCGCACCTCCGAGCAG
CCCGGCCCCGAGCCCCATCCCGAACTTGTTCTTCTTCGGCGGCCTCACGGCCTGCTGCTGGTACCCGTATCCGCCCTGCGGGTACCCGTACCCAGCTTGC
GGCGGGGGAGGGG