Detailed information on CNT30339028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671329Eragrostis tefSetaria viridis24.8124.0987.8899reverse complement
CNT30552658Eragrostis tefOryza glaberrima22.8113.5289.0191reverse complement

Expression of CNT30339028

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IGPLIGGGLAGLIYGDVFIGSYQPVADQDYA*

>peptide 2 (36 aa)
GSAPSSAVASPASSTVTCSSAPTSPSLTRTTHKRRS*

Sequence

>CNT30339028
GGATCGGCCCCCTCATCGGCGGTGGCCTCGCCGGCCTCATCTACGGTGACGTGTTCATCGGCTCCTACCAGCCCGTCGCTGACCAGGACTACGCATAAGC
GCCGGAGCTAGGATGAGATGAACCGGGTGCGCAACCCGCCGTTTGGATTCGCGTCGTCGTCGTTTGCTTTGCTCTTCACCACGTGACACACGGTCACGAA
TGTGTTTGTACCAAAGGTGTGTCGTGCTTGGTCTTGTGTATCACTTTCCTTTCCCTTTTTTGATTAAAAAACATCAATCAATGTAAAGATGCGTCGTATA
TGCTCGTTCGCAACTTTCGGTTTCCGTTACGCATAGACGAGGAAAGGCGGCGGCTCAAATCCCGCCTGAAGGATAAATAAACACAACCAGATCGCCGAC