Detailed information on CNT30338974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695194Eragrostis tefOryza sativa36.0417.7394.51164forward
CNT30526508Eragrostis tefPhaseolus vulgaris24.6211.5883.04112forward
CNT30562751Eragrostis tefActinidia chinensis22.224.2887.13101forward
CNT30219415Eragrostis tefKalanchoe fedtschenkoi27.0339.4282.11123forward
CNT30581456Eragrostis tefEchinochloa crusgalli31.6525.0497.92144forward

Expression of CNT30338974

Peptides detected in this lncRNA

>peptide 1 (41 aa)
FNKNNYPGRFRIIPKDRCTSECINSSLVHILHITKKFQQFS*

>peptide 2 (43 aa)
MVLLSGPLPVAAACTAKPRKATMARRACLISASCSRSFFSGSDA

>peptide 3 (47 aa)
MNKDHRVPIPSRSPQNQTTHAFIHLEHILIDGWIGAESNIRMALIIN*

>peptide 4 (42 aa)
LTRTIIQAGFVSSQKIDVQVNALIHHWFIYYTSPRSSSSSPN*

Sequence

>CNT30338974
TTTAACAAGAACAATTATCCAGGCCGGTTTCGTATCATCCCAAAAGATCGATGTACAAGTGAATGCATTAATTCATCATTGGTTCATATATTACACATCA
CCAAGAAGTTCCAGCAGTTCTCCTAATTAACCATACATCCTCCATTAAGAACATGAACAAAGATCATCGTGTCCCCATACCCTCTCGCTCGCCACAAAAT
CAAACGACGCACGCGTTCATCCATCTCGAGCACATTCTCATCGACGGATGGATCGGAGCAGAAAGCAATATACGGATGGCCTTAATTATTAATTAAGAGG
ATCCGGAGGAGAAGGTGTCGAAGATGGTGTTGTTGAGCGGGCCCTTGCCTGTGGCCGCGGCCTGCACGGCGAAGCCGAGGAAGGCGACCATGGCGAGGCG
CGCGTGCTTGATCTCCGCCAGCTGCAGCCGCTCCTTCTTCTCCGGGTCGGACGCG