Detailed information on CNT30338965


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179479Eragrostis tefSecale cereale31.8514.4596100forward
CNT30288841Eragrostis tefTriticum aestivum31.8518.3896100forward
CNT30659169Eragrostis tefTriticum dicoccoides31.8512.8596100forward
CNT30133575Eragrostis tefLolium perenne31.5315.5791.9299forward
CNT3013737Eragrostis tefZea mays31.5321.2493.9499forward

Expression of CNT30338965

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LAEPEPAEPRHDAPVLRRRVRKTGAQERARRGGHRRSHG*

>peptide 2 (78 aa)
SLPNPNPPNRATMRPFCGAGSARRVPRNVLAAAATDEAMASCSLLPCACDEVVVAIVRSGMEGWDLSYPVGLRRFLAH*

>peptide 3 (69 aa)
PCRTRTRRTAPRCARSAAPGPQDGCPGTCSPRRPPTKPWLAALCFPARVTRWWWLLFARVWRGGIFLIQ*

Sequence

>CNT30338965
TCCTTGCCGAACCCGAACCCGCCGAACCGCGCCACGATGCGCCCGTTCTGCGGCGCCGGGTCCGCAAGACGGGTGCCCAGGAACGTGCTCGCCGCGGCGG
CCACCGACGAAGCCATGGCTAGCTGCTCTCTGCTTCCCTGCGCGTGTGACGAGGTGGTGGTGGCTATTGTTCGCTCGGGTATGGAGGGGTGGGATCTTTC
TTATCCAGTAGGCCTACGCAGGTTTCTCGCCCACTAAGACGTTGTCACGTGGCATATCTTTTCTTGCGTTTGGAGATTTTGTTGTGTTTTCGACACTGTT
TTGAGAGTTTTTTG